Remove numpy<2.4 pin now that pytensor fix is released (#781) #2242
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| name: ci | |
| on: | |
| pull_request: | |
| branches: [main] | |
| push: | |
| branches: [main] | |
| permissions: {} | |
| jobs: | |
| prek: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| steps: | |
| - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2 | |
| with: | |
| # Security: do not set to true — prevents credential leakage (GitHub Advanced Security). | |
| persist-credentials: false | |
| fetch-depth: 0 | |
| - name: Set up Python | |
| uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0 | |
| with: | |
| python-version: "3.12" | |
| - name: Run prek on changed files in PRs | |
| if: github.event_name == 'pull_request' | |
| uses: j178/prek-action@53276d8b0d10f8b6672aa85b4588c6921d0370cc # v2.0.1 | |
| with: | |
| extra-args: --from-ref ${{ github.event.pull_request.base.sha }} --to-ref ${{ github.event.pull_request.head.sha }} | |
| - name: Run prek on all files on pushes | |
| if: github.event_name != 'pull_request' | |
| uses: j178/prek-action@53276d8b0d10f8b6672aa85b4588c6921d0370cc # v2.0.1 | |
| with: | |
| extra-args: --all-files | |
| check-environment-yml: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| steps: | |
| - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2 | |
| with: | |
| # Security: do not set to true — prevents credential leakage (GitHub Advanced Security). | |
| persist-credentials: false | |
| - name: Set up Python | |
| uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0 | |
| with: | |
| python-version: "3.12" | |
| - name: Install pyproject2conda | |
| run: pip install pyproject2conda | |
| - name: Regenerate environment.yml (same args as local prek hook config) | |
| run: | | |
| pyproject2conda yaml -e dev -o /tmp/environment.generated.yml -n CausalPy \ | |
| -w force --no-header \ | |
| --python-include "python>=3.12" \ | |
| -d make -d pip -d pymc-bart -r "marimo[mcp]" | |
| - name: Check environment.yml is in sync with pyproject.toml | |
| run: | | |
| # Compare YAML body only (skip 9-line autogenerated header in environment.yml) | |
| tail -n +10 environment.yml > /tmp/environment.current.yml | |
| diff -u /tmp/environment.current.yml /tmp/environment.generated.yml && echo "environment.yml is in sync with pyproject.toml" | |
| test: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| strategy: | |
| matrix: | |
| python-version: ["3.11", "3.14"] | |
| steps: | |
| - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2 | |
| with: | |
| # Security: do not set to true — prevents credential leakage (GitHub Advanced Security). | |
| persist-credentials: false | |
| - name: Set up Python | |
| uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Update pip and setuptools | |
| run: pip install --upgrade pip setuptools | |
| - name: Setup environment | |
| run: pip install -e .[test] | |
| - name: Run doctests | |
| run: pytest --doctest-modules --ignore=causalpy/tests/ causalpy/ --config-file=causalpy/tests/conftest.py --no-cov | |
| - name: Run extra tests | |
| run: pytest docs/source/.codespell/test_notebook_to_markdown.py --no-cov | |
| - name: Run tests | |
| run: pytest --cov-report=xml --no-cov-on-fail | |
| - name: Check codespell for notebooks | |
| run: | | |
| python ./docs/source/.codespell/notebook_to_markdown.py --tempdir tmp_markdown | |
| codespell | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@57e3a136b779b570ffcdbf80b3bdc90e7fab3de2 # v6.0.0 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} # use token for more robust uploads | |
| name: ${{ matrix.python-version }} | |
| fail_ci_if_error: false |