Merge pull request #343 from andrewkern/ponpyg_doc

ponpyg doc hooks

Author: jeromekelleher

docs/catalog.rst

@@ -43,6 +43,8 @@ Then, if you feel ready, make an issue on our
 
 .. speciescatalog:: HomSap
 
+.. speciescatalog:: PonPyg
+
 .. speciescatalog:: DroMel
 
 .. speciescatalog:: AraTha

docs/parameter_tables/PonPyg/TwoSpecies_2L11.csv

@@ -0,0 +1,7 @@
+Population size,"17,934",Ancestral pop. size
+Population size,"10,617",Pongo pygmaeus pop. size at split
+Population size,"7,317",Pongo abelii pop. size at split
+Population size,"8,805",Modern Pongo pygmaeus pop. size 
+Population size,"37,661",Modern Pongo abelii pop. size
+Epoch Time (gen.),"20,157",Species divergence time
+Generation time (yrs.),20,Generation time

stdpopsim/catalog/pongo_pygmaeus.py

@@ -115,7 +115,7 @@ def _orangutan():
         Bornean population slightly declines.
     """
 
-    citations = [_locke2011]
+    citations = [_locke2011.because(stdpopsim.CiteReason.DEM_MODEL)]
 
     populations = [
         stdpopsim.Population(
@@ -183,3 +183,6 @@ def _orangutan():
                 time=T_split, initial_size=Na, growth_rate=0, population_id=0),
         ],
         )
+
+
+_species.add_demographic_model(_orangutan())