red-dwarf/pyproject.toml at main · polis-community/red-dwarf · GitHub

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[project]
name = "red-dwarf"
version = "0.4.0"
description = "A DIMensional REDuction library for reproducing and experimenting with Polis-like data pipelines."
readme = "README.md"
requires-python = ">=3.10"
dependencies = [
    # Core dependencies
    "pandas>=1.5.0",
    "scikit-learn>=1.1.0",

    # Data loader
    "pydantic>=1.10.0",
    "requests>=2.28.0",
    #"requests-cache>=1.2.1",
    # Was getting warnings on stale cache (queued for next release after v1.2.1)
    # See: https://github.com/requests-cache/requests-cache/pull/1068
    "requests-cache",
    "requests-ratelimiter>=0.4.0",
    "fake-useragent>=1.4.0",
]

[tool.setuptools.packages.find]
include = ["reddwarf*"]

[tool.setuptools]
# Work-around for `uv`/`setuptools` bug.
# See: https://github.com/ToucanToco/peakina/pull/957/files
license-files = []

[tool.uv.sources]
requests-cache = { git = "https://github.com/requests-cache/requests-cache", rev = "12af54ded36" }

[project.optional-dependencies]
alt-algos = [
    "pacmap>=0.9.1",

    # Use older numba on macOS Intel (avoids build issues)
    # See: https://github.com/numba/llvmlite/issues/1389#issuecomment-3763361889
    # See: https://github.com/numba/llvmlite/issues/1357#issuecomment-3737290830
    "numba<0.63.0; platform_machine == 'x86_64' and sys_platform == 'darwin' and python_version < '3.14'",

    # Lowest we can be with sklearn 1.8
    # See: https://github.com/scikit-learn-contrib/hdbscan/pull/673
    "hdbscan>=0.8.41",
]
plots = [
    "concave-hull>=0.0.9",
    "seaborn>=0.11.0",
    "matplotlib>=3.5.0",
]
all = [
    "red-dwarf[alt-algos,plots]",
]
dev = [
    "coverage>=6.0",
    "cram>=0.7",
    "ipywidgets>=8.0.0",
    "mkdocs-same-dir>=0.1.3",
    "mkdocstrings-python>=1.8.0",
    "nbmake>=1.5.0",
    "pytest-cov>=4.0.0",
    "pytest>=7.0.0",
]

[dependency-groups]
alt-algos = [
    "pacmap>=0.9.1",
    "hdbscan>=0.8.40",
]
plots = [
    "concave-hull>=0.0.9",
    "seaborn>=0.11.0",
    "matplotlib>=3.5.0",
]
all = [
    {include-group = "alt-algos"},
    {include-group = "plots"},
]
dev = [
    "coverage>=6.0",
    "cram>=0.7",
    "ipywidgets>=8.0.0",
    "mkdocs-same-dir>=0.1.3",
    "mkdocstrings-python>=1.8.0",
    "nbmake>=1.5.0",
    "pytest-cov>=4.0.0",
    "pytest>=6.0.0",
]