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    151 repositories

    • ncbi-vdb

      Public
      ncbi-vdb
      C
      •
      Other
      •42•103•9•2•Updated Aug 20, 2026Aug 20, 2026

    • pgap

      Public
      NCBI Prokaryotic Genome Annotation Pipeline
      Common Workflow Language
      •
      Other
      •98•387•0•0•Updated Aug 19, 2026Aug 19, 2026

    • sra-tools

      Public
      SRA Tools
      C
      •
      Other
      •278•1.4k•22•9•Updated Aug 19, 2026Aug 19, 2026

    • ncbi-cxx-toolkit-public

      Public
      NCBI C++ Toolkit package sources
      C++
      •
      Other
      •44•101•2•0•Updated Aug 19, 2026Aug 19, 2026

    • stxtyper

      Public
      StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.
      bioinformaticsgenomicspathogen
      bioinformaticsgenomicspathogenescherichia-colibioinformatics-toolvirulence-genes
      C++
      •
      Other
      •7•18•1•0•Updated Aug 17, 2026Aug 17, 2026

    • tree-tool

      Public
      Incremental building of phylogenetic distance trees
      bioinformaticsevolutionphylogenetic-trees
      bioinformaticsevolutionphylogenetic-treesdata-analysisdistance-measuresbioinformatics-tool
      HTML
      •
      Other
      •10•35•0•0•Updated Aug 12, 2026Aug 12, 2026

    • datasets

      Public
      NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
      ncbigenomics-data
      ncbigenomics-data
      Jupyter Notebook
      •
      Other
      •67•553•26•2•Updated Aug 10, 2026Aug 10, 2026

    • amr

      Public
      AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
      bioinformaticsgenomicspathogen
      bioinformaticsgenomicspathogenantibiotic-resistance
      C++
      •
      Other
      •51•383•11•0•Updated Aug 10, 2026Aug 10, 2026

    • ncbi-cxx-toolkit-conan

      Public
      NCBI C++ Toolkit package recipe
      Python
      •13•14•0•0•Updated Aug 3, 2026Aug 3, 2026

    • ncbi-logging

      Public
      Log monitoring and gathering infrastructure to feed analytics
      C++
      •10•15•0•0•Updated Jul 28, 2026Jul 28, 2026

    • sra-lite-benchmarks

      Public
      Support material for the article on SRA Lite
      0•0•0•0•Updated Jul 27, 2026Jul 27, 2026

    • sra-tutorials

      Public
      Tutorials and guides for using the Sequence Read Archive
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated Jul 24, 2026Jul 24, 2026

    • cxx-toolkit

      Public
      HTML
      •
      The Unlicense
      •55•22•0•0•Updated Jul 23, 2026Jul 23, 2026

    • dbvar

      Public
      dbVar
      structuralvariationdbvar
      structuralvariationdbvar
      13•41•0•1•Updated Jul 22, 2026Jul 22, 2026

    • icn3d

      Public
      web-based protein structure viewer and analysis tool interactively or in batch mode
      nodejsdelphiwebgl
      nodejsdelphiwebglvrarjupyter-notebookchemicalproteinsnpnucleotide
      JavaScript
      •
      Other
      •54•175•7•3•Updated Jul 22, 2026Jul 22, 2026

    • ncbi_doc_template

      Public
      CSS
      •
      The Unlicense
      •7•4•0•0•Updated Jul 20, 2026Jul 20, 2026

    • igblast

      Public
      CSS
      •9•6•0•0•Updated Jul 8, 2026Jul 8, 2026

    • CF-random_software

      Public
      Prediction of alternative conformation and fold-switching proteins with ColabFold
      Python
      •
      Other
      •4•15•0•1•Updated Jul 7, 2026Jul 7, 2026

    • clinvar

      Public
      ClinVar aggregates information about genomic variation and its relationship to human health. Contact us at 'clinvar@ncbi.nlm.nih.gov' with any questions or…
      HTML
      •17•84•4•0•Updated Jun 30, 2026Jun 30, 2026

    • redenovo

      Public
      Python
      •
      MIT License
      •0•3•0•0•Updated Jun 18, 2026Jun 18, 2026

    • FcaSexDiff

      Public
      This repository contains the source code used to analyze the differences between male and female cells in the Fly Single Cell Atlas.
      Python
      •3•1•0•0•Updated Jun 10, 2026Jun 10, 2026

    • workshop-asm-2026

      Public
      Unlock the Power of NCBI Data. Pre-conference workshop for ASM Microbe 2026
      Jupyter Notebook
      •0•0•0•0•Updated Jun 3, 2026Jun 3, 2026

    • egapx

      Public
      Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
      Nextflow
      •
      Other
      •23•207•17•1•Updated Apr 27, 2026Apr 27, 2026

    • ngs-tools

      Public
      C++
      •
      Other
      •25•113•7•4•Updated Apr 23, 2026Apr 23, 2026

    • ncbi-vdb-conan

      Public
      Conan package recipe for NCBI VDB Toolkit
      Python
      •1•1•0•0•Updated Apr 22, 2026Apr 22, 2026

    • blast_plus_docs

      Public
      32•122•5•1•Updated Mar 24, 2026Mar 24, 2026

    • GNorm2

      Public
      Java
      •12•29•7•0•Updated Feb 23, 2026Feb 23, 2026

    • elastic-blast

      Public
      ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective
      bioinformaticsblastncbi
      bioinformaticsblastncbi
      Python
      •
      Other
      •23•72•3•1•Updated Jan 29, 2026Jan 29, 2026

    • docker

      Public
      Dockerfile
      •
      Other
      •34•54•2•0•Updated Jan 22, 2026Jan 22, 2026

    • EvoGeneX

      Public
      This repository contains the source code of the R package for EvoGeneX, a software to infer the mode of evolution from the gene expression data.
      HTML
      •
      GNU General Public License v3.0
      •6•30•3•0•Updated Dec 1, 2025Dec 1, 2025
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