bnediction repositories

12 repositories

bonesis
Public
Synthesis and Reprogramming of Most Permissive Boolean Networks
systems-biology synthesis answer-set-programming
systems-biology synthesis answer-set-programming boolean-networks
Python
•
Other
•4•16•2•0•Updated Aug 20, 2026Aug 20, 2026
scbolt
Public
Framework for Boolean network learning from multi-condition single-cell transcriptomes
bioinformatics systems-biology network-inference
bioinformatics systems-biology network-inference single-cell-rna-seq boolean-networks logical-modeling gene-regulatory-networks scbolt bonesis
Python
•1•2•0•0•Updated Aug 6, 2026Aug 6, 2026
bonesistools
Public
Python toolkit from omics data to executable models
python bioinformatics systems-biology
python bioinformatics systems-biology omics single-cell boolean-networks logical-modeling anndata gene-regulatory-networks mudata
Python
•
Other
•1•3•0•0•Updated Jul 29, 2026Jul 29, 2026
scBoolSeq
Public
scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics
machine-learning bioinformatics scikit-learn
machine-learning bioinformatics scikit-learn computational-biology pandas python3 scrna-seq single-cell-rna-seq boolean-networks
Python
•1•16•3•0•Updated Jul 16, 2026Jul 16, 2026
mpbn
Public
Brief Python implementation of Most Permissive Boolean Networks
Python
•3•20•0•0•Updated May 18, 2026May 18, 2026
BooleanNetworks.jl
Public
Boolean networks in Julia
Julia
•
MIT License
•0•7•0•0•Updated Mar 10, 2026Mar 10, 2026
scBoolSeq-supplementary
Public
Notebooks demonstrating scBoolSeq for scRNA-Seq binarization and synthetic generation
Jupyter Notebook
•0•0•0•0•Updated Jun 28, 2024Jun 28, 2024
bnediction.github.io
Public
BNediction webpage
HTML
•0•0•0•0•Updated Jun 14, 2024Jun 14, 2024
cegar-bonesis
Public
CEGAR for universal properties over minimal trap spaces of Boolean networks
Python
•0•2•0•0•Updated Jul 11, 2023Jul 11, 2023
reprogramming-with-bonesis
Public
Executable paper and data demonstrating marker reprogramming of Boolean networks with BoNesis
control answer-set-programming attractors
control answer-set-programming attractors reprogramming boolean-networks minimal-trap-spaces most-permissive
TeX
•0•0•0•0•Updated Mar 24, 2023Mar 24, 2023
mpbn-sim
Public archive
Simulation of Most Permissive Boolean networks
Python
•0•1•0•0•Updated Dec 1, 2022Dec 1, 2022
profile_binr
Public archive
PROFILE RNA-seq binarization technique.
bioinformatics computational-biology pandas
bioinformatics computational-biology pandas python3 rna-seq-analysis binarization single-cell-rna-seq normalisation rpy2
Python
•
BSD 3-Clause "New" or "Revised" License
•1•3•0•1•Updated May 23, 2022May 23, 2022

ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.

Navigation Menu

BNediction

All

12 repositories

bonesis

scbolt

bonesistools

scBoolSeq

mpbn

BooleanNetworks.jl

scBoolSeq-supplementary

bnediction.github.io

cegar-bonesis

reprogramming-with-bonesis

mpbn-sim

profile_binr

Repositories list

12 repositories