Repositories list

• PepMCP

  Public
  a graph-based peptide-tailored MCP predictor

  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 25, 2026Jul 25, 2026

• Multistate_Complex_AF

  Public
  Scripts for the analysis of multiple states of protein complexes

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 12, 2026Jun 12, 2026

• CTGoMartini

  Public
  Python

  •

  MIT License

  •33 forks•88 stars•00 issues•00 pull requests•Updated May 11, 2026May 11, 2026

• FoldDoF

  Public
  Utilizing the Primary Degrees of Freedom of Protein Backbone for Geometric Modeling and Generation

  Jupyter Notebook

  •00 forks•22 stars•00 issues•00 pull requests•Updated May 9, 2026May 9, 2026

• MCP-ANM

  Public
  MCP-ANM/mANM with PRS for membrane tension & tethering

  prsmembrane-proteinsanm+ 1

  prsmembrane-proteinsanmmechanosensitive

  Python

  •00 forks•22 stars•00 issues•00 pull requests•Updated Mar 20, 2026Mar 20, 2026

• 1D_ion_BD_simulation

  Public
  A program for one dimensional ion Brownian dynamics simulation

  Fortran

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 18, 2026Mar 18, 2026

• MemConverter

  Public
  An iterative pipeline for reprogramming protein localization in membrane or aqueous solution.

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •00 forks•44 stars•00 issues•00 pull requests•Updated Feb 9, 2026Feb 9, 2026

• Multisite_Calcium

  Public
  A multisite calcium ion model optimized for calcium-protein interactions in molecular dynamics simulations

  Perl

  •33 forks•55 stars•00 issues•00 pull requests•Updated Jan 31, 2026Jan 31, 2026

• AMPainter

  Public
  Python

  •22 forks•99 stars•11 issue•00 pull requests•Updated Dec 1, 2025Dec 1, 2025

• Pore-Forming_AMP_SVM

  Public
  Python

  •00 forks•22 stars•00 issues•00 pull requests•Updated Dec 1, 2025Dec 1, 2025

• ProtRAP-LM

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •11 fork•99 stars•00 issues•00 pull requests•Updated Aug 20, 2025Aug 20, 2025

• OVrCSU

  Public
  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 29, 2025Apr 29, 2025

• CTGoMartini-tests

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 15, 2025Apr 15, 2025

• TIMOrientationAnalysis

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 18, 2024Nov 18, 2024

• SwitchingGo-Martini

  Public
  Python

  •11 fork•33 stars•00 issues•00 pull requests•Updated Nov 5, 2024Nov 5, 2024

• GMX_ElectricField_Plugin

  Public
  C++

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 15, 2024Oct 15, 2024

• MCP_Predictor

  Public
  A deep learning-based predictor for membrane contact probability (MCP)

  Python

  •

  GNU General Public License v3.0

  •00 forks•22 stars•11 issue•00 pull requests•Updated Jul 20, 2024Jul 20, 2024

• GromacsPlugin

  Public
  A plugin for GROMACS that adds an extra input for constant electric field in .mdp file

  C++

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jun 20, 2024Jun 20, 2024

• computbiophys.github.io

  Public
  HTML

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 14, 2024Mar 14, 2024

• ProtRAP

  Public
  Predictor for lipid accessibility and solvent accessibility of proteins

  Python

  •

  GNU General Public License v3.0

  •11 fork•44 stars•11 issue•00 pull requests•Updated Apr 17, 2023Apr 17, 2023