Fix test failures with openminds 0.5.0 by specifying version="v3" in load() calls

openminds 0.5.0 changed Collection.load()'s DEFAULT_VERSION from "v4" to "v5",
causing tests to fail because the v5 registry does not recognise v3 type URIs
(https://openminds.ebrains.eu/core/...). Explicitly passing version="v3" aligns
the load calls with the v3 objects produced by the converter.

Author: apdavison

test/test_bids_examples.py

@@ -19,7 +19,7 @@ def test_example_datasets(dataset_label, dataset_subject_number, dataset_subject
     test_dir = os.path.join("bids-examples", dataset_label)
     bids2openminds.converter.convert(test_dir, save_output=True)
     c = Collection()
-    c.load(os.path.join(test_dir, "openminds.jsonld"))
+    c.load(os.path.join(test_dir, "openminds.jsonld"), version="v3")
 
     subject_number = 0
     subject_state_number = 0

test/test_example_datasets_click.py

@@ -13,7 +13,7 @@ def test_example_datasets_click():
     result = runner.invoke(convert_click, [test_dir])
     assert result.exit_code == 0
     c = Collection()
-    c.load(os.path.join(test_dir, "openminds.jsonld"))
+    c.load(os.path.join(test_dir, "openminds.jsonld"), version="v3")
 
 
 def test_example_datasets_click_seperate_files():
@@ -36,4 +36,4 @@ def test_example_datasets_click_output_location():
         convert_click, ["-o", openminds_file, test_dir])
     assert result.exit_code == 0
     c = Collection()
-    c.load(openminds_file)
+    c.load(openminds_file, version="v3")

test/test_thorough_bids_example.py

@@ -31,12 +31,12 @@ def load_collections():
             file.write(actual_data)
 
         reference_collection = Collection()
-        reference_collection.load(tempdir+test_standard_name)
+        reference_collection.load(tempdir+test_standard_name, version="v3")
 
         bids2openminds.converter.convert(test_dataset, save_output=True)
         generated_collection = Collection()
         generated_collection.load(os.path.join(
-            test_dataset, "openminds.jsonld"))
+            test_dataset, "openminds.jsonld"), version="v3")
 
         collections[dataset_label] = (
             reference_collection, generated_collection)