fix custom annotation filters for getStructuralVariantGenes sql

onursumer · onursumer · commit 51ee34406121 · 2025-12-08T15:28:28.000-05:00
diff --git a/src/main/resources/mappers/clickhouse/alteration/ClickhouseAlterationMapper.xml b/src/main/resources/mappers/clickhouse/alteration/ClickhouseAlterationMapper.xml
@@ -73,6 +73,7 @@
             <include
                 refid="org.cbioportal.infrastructure.repository.clickhouse.studyview.ClickhouseStudyViewFilterMapper.applyStudyViewFilterUsingSampleId"
             />
+            <include refid="whereCustomAnnotations"/>
         </where>
         GROUP BY entrez_gene_id, hugo_gene_symbol
     </select>
