diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index 8436fd52b..b197a8860 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout main - uses: actions/checkout@v6 + uses: actions/checkout@v4 - name: Deploy docs uses: mhausenblas/mkdocs-deploy-gh-pages@master @@ -24,3 +24,4 @@ jobs: env: GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} CONFIG_FILE: mkdocs.yaml + diff --git a/bulk_ntr_workflow/source_data/fallopian_tube.csv b/bulk_ntr_workflow/source_data/fallopian_tube.csv new file mode 100644 index 000000000..20e8a6ec2 --- /dev/null +++ b/bulk_ntr_workflow/source_data/fallopian_tube.csv @@ -0,0 +1,64 @@ +tables,as,as_label,UBERON ID,Pull Request/Issue,parents_as,parents_as_label,references +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-ampulla,basement membrane of fallopian tube ampulla,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla,wall of Fallopian tube ampulla, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-infundibulum,basement membrane of fallopian tube infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum,wall of Fallopian tube infundibulum, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-intramural-segment,basement membrane of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment,wall of Fallopian tube intramural segment, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-isthmus,basement membrane of fallopian tube isthmus,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus,wall of Fallopian tube isthmus, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-ampulla,fluid of fallopian tube ampulla,,,UBERON:0012648,ampulla of fallopian tube, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-fimbria,fluid of fallopian tube fimbria,,,UBERON:8410010,fimbria of fallopian tube, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-infundibulum,fluid of fallopian tube infundibulum,,,UBERON:0003984,uterine tube infundibulum, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-intramural-segment,fluid of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of Fallopian tube, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-isthmus,fluid of fallopian tube isthmus,,,UBERON:0016632,isthmus of fallopian tube, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-ampulla,inner muscle layer of fallopian tube ampulla,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla,muscle layer of oviduct ampulla, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-infundibulum,inner muscle layer of fallopian tube infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum,muscle layer of oviduct infundibulum, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-intramural-segment,inner muscle layer of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment,muscle layer of oviduct intramural segment, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-isthmus,inner muscle layer of fallopian tube isthmus,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus,muscle layer of oviduct isthmus, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of fallopian tube,,,UBERON:0003889,fallopian tube, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_lamina-propria-fallopian-tube-ampulla,lamina propria Fallopian tube ampulla,,,UBERON:0012648,ampulla of fallopian tube,"https://doi.org/10.1016/j.celrep.2021.108978, PMID:25994820, PMID:16938110" +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-fimbria,lamina propria of Fallopian tube fimbria,,,UBERON:8410010,fimbria of fallopian tube,"https://doi.org/10.1016/j.celrep.2021.108978, PMID:25994820, PMID:16938110" +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-infundibulum,lamina propria of Fallopian tube infundibulum,,,UBERON:0003984,uterine tube infundibulum,"https://doi.org/10.1016/j.celrep.2021.108978, PMID:25994820, PMID:16938110" +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-intramural-segment,lamina propria of Fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of Fallopian tube,"https://doi.org/10.1016/j.celrep.2021.108978, PMID:16938110, PMID:25994820" +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-isthmus,lamina propria of Fallopian tube isthmus,,,UBERON:0016632,isthmus of fallopian tube,"https://doi.org/10.1016/j.celrep.2021.108978, PMID:25994820, PMID:16938110" +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_lymphatic-of-mesosalpinx,lymphatic of mesosalpinx,,,https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx,serous membrane lining of mesosalpinx, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_mesothelium-of-mesosalpinx,mesothelium of mesosalpinx,,,UBERON:0012331,mesosalpinx,https://doi.org/10.1016/B978-0-12-801238-3.64401-X +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-ampulla,middle muscle layer of fallopian tube ampulla,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla,muscle layer of oviduct ampulla, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-infundibulum,middle muscle layer of fallopian tube infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum,muscle layer of oviduct infundibulum, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-intramural-segment,middle muscle layer of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment,muscle layer of oviduct intramural segment, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-isthmus,middle muscle layer of fallopian tube isthmus,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus,muscle layer of oviduct isthmus, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-ampulla,mucosa of fallopian tube ampulla,,,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-ampulla,plica of Fallopian tube ampulla, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-fimbria,mucosa of fallopian tube fimbria,,,UBERON:8410010,fimbria of uterine tube, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-infundibulum,mucosa of fallopian tube infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-infundibulum,plica of Fallopian tube infundibulum, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-intramural-segment,mucosa of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-intramural-segment,plica of Fallopian tube intramural segment, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-isthmus,mucosa of fallopian tube isthmus,,,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-isthmus,plica of Fallopian tube isthmus, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla,muscle layer of oviduct ampulla,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla,wall of Fallopian tube ampulla, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum,muscle layer of oviduct infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum,wall of Fallopian tube infundibulum, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment,muscle layer of oviduct intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment,wall of Fallopian tube intramural segment, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus,muscle layer of oviduct isthmus,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus,wall of Fallopian tube isthmus, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-ampulla,nerve of fallopian tube ampulla,,,UBERON:0012648,ampulla of fallopian tube, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-fimbria,nerve of fallopian tube fimbria,,,UBERON:8410010,fimbria of fallopian tube, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-infundibulum,nerve of fallopian tube infundibulum,,,UBERON:0003984,uterine tube infundibulum, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-intramural-segment,nerve of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of Fallopian tube, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-isthmus,nerve of fallopian tube isthmus,,,UBERON:0016632,isthmus of fallopian tube, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_nerve-of-mesosalpinx,nerve of mesosalpinx,,,https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx,serous membrane lining of mesosalpinx, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-ampulla,outer muscle layer of fallopian tube ampulla,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla,muscle layer of oviduct ampulla, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-infundibulum,outer muscle layer of fallopian tube infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum,muscle layer of oviduct infundibulum, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-intramural-segment,outer muscle layer of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment,muscle layer of oviduct intramural segment, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-isthmus,outer muscle layer of fallopian tube isthmus,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus,muscle layer of oviduct isthmus, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-ampulla,plica of fallopian tube ampulla,,,UBERON:0012648,ampulla of fallopian tube, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-infundibulum,plica of fallopian tube infundibulum,,,UBERON:0003984,uterine tube infundibulum, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-intramural-segment,plica of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of Fallopian tube, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-isthmus,plica of fallopian tube isthmus,,,UBERON:0016632,isthmus of fallopian tube, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-ampulla,serosa of fallopian tube ampulla,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla,wall of Fallopian tube ampulla, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-infundibulum,serosa of fallopian tube infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum,wall of Fallopian tube infundibulum, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-intramural-segment,serosa of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment,wall of Fallopian tube intramural segment, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-isthmus,serosa of fallopian tube isthmus,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus,wall of Fallopian tube isthmus, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx,serous membrane lining of mesosalpinx,,,UBERON:0012331,mesosalpinx, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-ampulla,vasculature of Fallopian tube ampulla,,,UBERON:0012648,ampulla of fallopian tube, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-fimbria,vasculature of Fallopian tube fimbria,,,UBERON:8410010,fimbria of fallopian tube, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-infundibulum,vasculature of Fallopian tube infundibulum,,,UBERON:0003984,uterine tube infundibulum, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-intramural-segment,vasculature of Fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of Fallopian tube, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-isthmus,vasculature of Fallopian tube isthmus,,,UBERON:0016632,isthmus of fallopian tube, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_vasculature-of-mesosalpinx,vasculature of mesosalpinx,,,https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx,serous membrane lining of mesosalpinx, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla,wall of fallopian tube ampulla,,,UBERON:0012648,ampulla of fallopian tube, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum,wall of fallopian tube infundibulum,,,UBERON:0003984,uterine tube infundibulum, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment,wall of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of Fallopian tube, +fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus,wall of fallopian tube isthmus,,,UBERON:0016632,isthmus of fallopian tube, \ No newline at end of file diff --git a/docs/odk-workflows/RepositoryFileStructure.md b/docs/odk-workflows/RepositoryFileStructure.md index d2d4bc4fc..c0bf10c25 100644 --- a/docs/odk-workflows/RepositoryFileStructure.md +++ b/docs/odk-workflows/RepositoryFileStructure.md @@ -49,3 +49,5 @@ These are the components in UBERON | vasculature_class.owl | None | | hra_depiction_3d_images.owl | https://raw.githubusercontent.com/hubmapconsortium/ccf-validation-tools/master/owl/hra_uberon_3d_images.owl | | hra_skeleton.owl | None | +| hra_fallopian_tube_groups.owl | None | +| hra_fallopian_tube.owl | None | diff --git a/src/ontology/Makefile b/src/ontology/Makefile index 1aef767c9..c65a7e8e0 100644 --- a/src/ontology/Makefile +++ b/src/ontology/Makefile @@ -10,7 +10,7 @@ # More information: https://github.com/INCATools/ontology-development-kit/ # Fingerprint of the configuration file when this Makefile was last generated -CONFIG_HASH= 4a0a1ec54c99987a5f925c045d14b90a8cea94072e234dab7b5b4841b16aa062 +CONFIG_HASH= 91414c1a5f963a19baa027e134f3e31fdf6ee4b115f70a6cdeec15180d073d89 # ---------------------------------------- @@ -59,7 +59,7 @@ OBODATE ?= $(shell date +'%d:%m:%Y %H:%M') VERSION= $(TODAY) ANNOTATE_ONTOLOGY_VERSION = annotate -V $(ONTBASE)/releases/$(VERSION)/$@ --annotation owl:versionInfo $(VERSION) ANNOTATE_CONVERT_FILE = annotate --ontology-iri $(ONTBASE)/$@ $(ANNOTATE_ONTOLOGY_VERSION) convert -f ofn --output $@.tmp.owl && mv $@.tmp.owl $@ -OTHER_SRC = $(PATTERNDIR)/definitions.owl $(COMPONENTSDIR)/disjoint_union_over.owl $(COMPONENTSDIR)/mappings.owl $(COMPONENTSDIR)/in-subset.owl $(COMPONENTSDIR)/hra_subset.owl $(COMPONENTSDIR)/vasculature_class.owl $(COMPONENTSDIR)/hra_depiction_3d_images.owl $(COMPONENTSDIR)/hra_skeleton.owl +OTHER_SRC = $(PATTERNDIR)/definitions.owl $(COMPONENTSDIR)/disjoint_union_over.owl $(COMPONENTSDIR)/mappings.owl $(COMPONENTSDIR)/in-subset.owl $(COMPONENTSDIR)/hra_subset.owl $(COMPONENTSDIR)/vasculature_class.owl $(COMPONENTSDIR)/hra_depiction_3d_images.owl $(COMPONENTSDIR)/hra_skeleton.owl $(COMPONENTSDIR)/hra_fallopian_tube_groups.owl $(COMPONENTSDIR)/hra_fallopian_tube.owl ONTOLOGYTERMS = $(TMPDIR)/ontologyterms.txt EDIT_PREPROCESSED = $(TMPDIR)/$(ONT)-preprocess.owl @@ -493,6 +493,8 @@ recreate-components: --assume-new=$(TMPDIR)/stamp-component-vasculature_class.owl \ --assume-new=$(TMPDIR)/stamp-component-hra_depiction_3d_images.owl \ --assume-new=$(TMPDIR)/stamp-component-hra_skeleton.owl \ + --assume-new=$(TMPDIR)/stamp-component-hra_fallopian_tube_groups.owl \ + --assume-new=$(TMPDIR)/stamp-component-hra_fallopian_tube.owl \ COMP=true IMP=false MIR=true PAT=true all_components .PHONY: no-mirror-recreate-components @@ -504,6 +506,8 @@ no-mirror-recreate-components: --assume-new=$(TMPDIR)/stamp-component-vasculature_class.owl \ --assume-new=$(TMPDIR)/stamp-component-hra_depiction_3d_images.owl \ --assume-new=$(TMPDIR)/stamp-component-hra_skeleton.owl \ + --assume-new=$(TMPDIR)/stamp-component-hra_fallopian_tube_groups.owl \ + --assume-new=$(TMPDIR)/stamp-component-hra_fallopian_tube.owl \ COMP=true IMP=false MIR=false PAT=true all_components .PHONY: recreate-% @@ -574,6 +578,18 @@ $(COMPONENTSDIR)/hra_skeleton.owl: $(TEMPLATEDIR)/hra-skeleton.template.tsv $(TM $(ANNOTATE_CONVERT_FILE) .PRECIOUS: $(COMPONENTSDIR)/hra_skeleton.owl +$(COMPONENTSDIR)/hra_fallopian_tube_groups.owl: $(TEMPLATEDIR)/hra-fallopian-tube-groups.template.tsv $(TMPDIR)/stamp-component-hra_fallopian_tube_groups.owl + $(ROBOT) template \ + --template $(TEMPLATEDIR)/hra-fallopian-tube-groups.template.tsv \ + $(ANNOTATE_CONVERT_FILE) +.PRECIOUS: $(COMPONENTSDIR)/hra_fallopian_tube_groups.owl + +$(COMPONENTSDIR)/hra_fallopian_tube.owl: $(TEMPLATEDIR)/hra-fallopian-tube.template.tsv $(TMPDIR)/stamp-component-hra_fallopian_tube.owl + $(ROBOT) template \ + --template $(TEMPLATEDIR)/hra-fallopian-tube.template.tsv \ + $(ANNOTATE_CONVERT_FILE) +.PRECIOUS: $(COMPONENTSDIR)/hra_fallopian_tube.owl + endif # COMP=true # ---------------------------------------- # Mirroring upstream ontologies diff --git a/src/ontology/catalog-v001.xml b/src/ontology/catalog-v001.xml index b745320ea..3ba63ae50 100644 --- a/src/ontology/catalog-v001.xml +++ b/src/ontology/catalog-v001.xml @@ -10,6 +10,8 @@ + + diff --git a/src/ontology/components/hra_fallopian_tube.owl b/src/ontology/components/hra_fallopian_tube.owl new file mode 100644 index 000000000..e588a4287 --- /dev/null +++ b/src/ontology/components/hra_fallopian_tube.owl @@ -0,0 +1,795 @@ +Prefix(:=) +Prefix(owl:=) +Prefix(rdf:=) +Prefix(xml:=) +Prefix(xsd:=) +Prefix(rdfs:=) + + +Ontology( + +Annotation(owl:versionInfo "2026-06-01") + +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(ObjectProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) + + + +############################ +# Classes +############################ + +# Class: (basement membrane of fallopian tube ampulla) + +AnnotationAssertion(Annotation( "PMID:33772852") Annotation( "https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-ampulla") "An acellular membrane that lies adjacent to the epithelial cells of the fallopian tube ampulla mucosa, situated between the luminal epithelium and the underlying lamina propria of the ampulla.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "basement membrane of fallopian tube ampulla") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (basement membrane of fallopian tube infundibulum) + +AnnotationAssertion(Annotation( "PMID:22918811") Annotation( "PMID:34496720") Annotation( "PMID:7004702") Annotation( "https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-infundibulum") "An acellular basement membrane that underlies the epithelium of the fallopian tube infundibulum, composed of basal lamina and reticular lamina that anchors the ciliated columnar epithelium to the underlying connective tissue.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Basement_membrane") +AnnotationAssertion( "Wikipedia:Infundibulum_of_uterine_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "basement membrane of fallopian tube infundibulum") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (basement membrane of fallopian tube intramural segment) + +AnnotationAssertion(Annotation( "PMID:7004702") Annotation( "https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-intramural-segment") "A basement membrane of epithelium that underlies the epithelial cells lining the intramural segment of the fallopian tube, the narrow tubular portion that penetrates the myometrial wall of the uterus.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "basement membrane of fallopian tube intramural segment") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (basement membrane of fallopian tube isthmus) + +AnnotationAssertion(Annotation( "PMID:25866566") Annotation( "PMID:31613440") Annotation( "https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-isthmus") "An acellular membrane that is part of the epithelium of the isthmus of the fallopian tube, lying adjacent to the epithelial cells between the epithelial layer and the underlying lamina propria.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "FMA:18306") +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "basement membrane of fallopian tube isthmus") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (fluid of fallopian tube ampulla) + +AnnotationAssertion(Annotation( "PMID:33167378") Annotation( "PMID:34496720") Annotation( "https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-ampulla") "A bodily fluid that fills the lumen of the fallopian tube ampulla, providing the aqueous medium in which fertilization occurs and through which the oocyte and sperm move.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Ampulla_of_uterine_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluid of fallopian tube ampulla") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (fluid of fallopian tube fimbria) + +AnnotationAssertion(Annotation( "PMID:25994820") Annotation( "https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-fimbria") "A bodily fluid that is located in or secreted by the fimbria of the fallopian tube, which may facilitate the capture and transport of the ovum from the ovary into the oviduct.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluid of fallopian tube fimbria") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (fluid of fallopian tube infundibulum) + +AnnotationAssertion(Annotation( "PMID:25994820") Annotation( "https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-infundibulum") "A bodily fluid that is located in the infundibulum of the fallopian tube, which accumulates in the funnel-shaped opening where the ovulated egg enters the uterine tube.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluid of fallopian tube infundibulum") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (fluid of fallopian tube intramural segment) + +AnnotationAssertion(Annotation( "PMID:16938110") Annotation( "https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-intramural-segment") "A bodily fluid that is contained within the lumen of the intramural segment of the fallopian tube, providing a medium for the passage of gametes and early embryos through this narrow tubular portion.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluid of fallopian tube intramural segment") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (fluid of fallopian tube isthmus) + +AnnotationAssertion(Annotation( "https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-isthmus") "A bodily fluid that is contained within the lumen of the isthmus of the fallopian tube.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluid of fallopian tube isthmus") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (inner muscle layer of fallopian tube ampulla) + +AnnotationAssertion(Annotation( "PMID:1964529") Annotation( "PMID:2409745") Annotation( "https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-ampulla") "A circular smooth muscle layer that is part of the muscle coat of the ampulla of the fallopian tube. This layer forms the innermost component of the muscularis and, together with the outer longitudinal layer, generates peristaltic contractions that facilitate oocyte and embryo transport through the ampullar region.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "inner muscle layer of fallopian tube ampulla") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (inner muscle layer of fallopian tube infundibulum) + +AnnotationAssertion(Annotation( "PMID:25866566") Annotation( "PMID:27875265") Annotation( "https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-infundibulum") "An organ component layer composed primarily of circularly arranged smooth muscle tissue that forms the innermost layer of the muscular coat of the uterine tube infundibulum, contributing to peristaltic contractions that assist in gamete and embryo transport.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "FMA:18336") +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "inner muscle layer of fallopian tube infundibulum") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (inner muscle layer of fallopian tube intramural segment) + +AnnotationAssertion(Annotation( "PMID:25866566") Annotation( "https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-intramural-segment") "The innermost circular smooth muscle layer of the muscularis of the fallopian tube intramural part, which lies within the uterine wall and contributes to peristaltic contractions that propel the ovum toward the uterus.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "inner muscle layer of fallopian tube intramural segment") +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (inner muscle layer of fallopian tube isthmus) + +AnnotationAssertion(Annotation( "https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-isthmus") "A circular smooth muscle layer that forms the innermost component of the muscular coat of the fallopian tube isthmus, contributing to peristaltic contractions that propel the oocyte toward the uterus.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "inner muscle layer of fallopian tube isthmus") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (intramural segment of fallopian tube) + +AnnotationAssertion(Annotation( "PMID:2565256") Annotation( "Wikipedia:Fallopian_tube") Annotation( "https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube") "A subdivision of the fallopian tube that lies within the myometrium, the muscular wall of the uterus, connecting the isthmus to the uterine cavity. This is the narrowest and shortest segment of the fallopian tube, measuring approximately 0.7 mm in diameter and 1 cm in length.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "intramural segment of fallopian tube") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (lamina propria Fallopian tube ampulla) + +AnnotationAssertion(Annotation( "PMID:16938110") Annotation( "PMID:25994820") Annotation( "PMID:7004702") Annotation( "https://doi.org/10.1016/j.celrep.2021.108978") Annotation( "https://purl.org/ccf/ASCTB-TEMP_lamina-propria-fallopian-tube-ampulla") "A lamina propria that is part of the mucosa of the fallopian tube ampulla, consisting of a thin layer of loose connective tissue underlying the luminal epithelium and containing blood vessels and immune cells.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "lamina propria Fallopian tube ampulla") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (lamina propria of Fallopian tube fimbria) + +AnnotationAssertion(Annotation( "PMID:16938110") Annotation( "PMID:25994820") Annotation( "https://doi.org/10.1016/j.celrep.2021.108978") Annotation( "https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-fimbria") "A connective tissue layer underlying the epithelium of the fimbria of the fallopian tube, providing structural support to the fimbrial fringes that extend toward the ovary.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "lamina propria of Fallopian tube fimbria") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (lamina propria of Fallopian tube infundibulum) + +AnnotationAssertion(Annotation( "PMID:16938110") Annotation( "PMID:25994820") Annotation( "https://doi.org/10.1016/j.celrep.2021.108978") Annotation( "https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-infundibulum") "A lamina propria that is part of the uterine tube infundibulum, providing structural support to the mucosal layer of the funnel-shaped abdominal extremity of the fallopian tube.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "lamina propria of Fallopian tube infundibulum") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (lamina propria of Fallopian tube intramural segment) + +AnnotationAssertion(Annotation( "PMID:16938110") Annotation( "PMID:25994820") Annotation( "https://doi.org/10.1016/j.celrep.2021.108978") Annotation( "https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-intramural-segment") "A lamina propria that forms the connective tissue layer beneath the epithelium in the mucosa of the intramural segment of the fallopian tube, which is the portion of the uterine tube that passes through the wall of the uterus.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "FMA:18319") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "lamina propria of Fallopian tube intramural segment") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (lamina propria of Fallopian tube isthmus) + +AnnotationAssertion(Annotation( "PMID:16938110") Annotation( "PMID:25994820") Annotation( "https://doi.org/10.1016/j.celrep.2021.108978") Annotation( "https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-isthmus") "A lamina propria that is part of the isthmus of the fallopian tube, consisting of a thin layer of loose connective tissue underlying the luminal epithelium.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "lamina propria of Fallopian tube isthmus") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (lymphatic of mesosalpinx) + +AnnotationAssertion(Annotation( "PMID:29763118") Annotation( "https://purl.org/ccf/ASCTB-TEMP_lymphatic-of-mesosalpinx") "A lymphatic vessel that drains lymph from the mesosalpinx, the serous mesenteric fold extending from the fallopian tube to the ovary.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Mesosalpinx") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "lymphatic of mesosalpinx") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (mesothelium of mesosalpinx) + +AnnotationAssertion(Annotation( "PMID:29763118") Annotation( "https://doi.org/10.1016/B978-0-12-801238-3.64401-X") Annotation( "https://purl.org/ccf/ASCTB-TEMP_mesothelium-of-mesosalpinx") "A mesothelium that forms the epithelial lining of the mesosalpinx, the portion of the broad ligament surrounding the fallopian tube.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Mesosalpinx") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mesothelium of mesosalpinx") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (middle muscle layer of fallopian tube ampulla) + +AnnotationAssertion(Annotation( "PMID:2409745") Annotation( "PMID:24176284") Annotation( "https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-ampulla") "A smooth muscle layer that is part of the muscle coat of the ampulla of the fallopian tube, situated between the inner circular and outer longitudinal muscle layers. This intermediate layer contributes to the contractile function of the ampulla during gamete and early embryo transport.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "middle muscle layer of fallopian tube ampulla") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (middle muscle layer of fallopian tube intramural segment) + +AnnotationAssertion(Annotation( "PMID:25866566") Annotation( "https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-intramural-segment") "A smooth muscle layer of the muscularis of the fallopian tube intramural part, located between the inner circular and outer longitudinal muscle layers.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "middle muscle layer of fallopian tube intramural segment") +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (middle muscle layer of fallopian tube isthmus) + +AnnotationAssertion(Annotation( "https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-isthmus") "A smooth muscle layer situated between the inner circular and outer longitudinal muscle layers of the fallopian tube isthmus, contributing to the muscular wall that facilitates peristalsis.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "middle muscle layer of fallopian tube isthmus") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (mucosa of fallopian tube ampulla) + +AnnotationAssertion(Annotation( "PMID:42032991") Annotation( "https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-ampulla") "A mucosa that is part of an ampulla of fallopian tube. The mucosa of the ampulla is characterized by an extensive array of complex mucosal folds (plicae), and is composed of simple columnar epithelium containing ciliated cells, secretory cells, and peg cells overlying a thin lamina propria.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mucosa of fallopian tube ampulla") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (mucosa of fallopian tube fimbria) + +AnnotationAssertion(Annotation( "PMID:25994820") Annotation( "https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-fimbria") "A mucosal lining of the fimbria of the fallopian tube, comprising the epithelium and underlying lamina propria of the fimbrial fringes.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mucosa of fallopian tube fimbria") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (mucosa of intramural part of fallopian tube) + +AnnotationAssertion(Annotation( "PMID:42088488") Annotation( "PMID:42123609") Annotation( "https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-intramural-segment") "A mucosa that is part of the intramural segment of the fallopian tube. The intramural (or interstitial) part of the fallopian tube is the narrowest segment that lies within the myometrium, the muscular wall of the uterus, extending from the uterine cavity to where it opens into the broader isthmus of the tube.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mucosa of intramural part of fallopian tube") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (mucosa of fallopian tube isthmus) + +AnnotationAssertion(Annotation( "PMID:25595539") Annotation( "PMID:28413873") Annotation( "https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-isthmus") "A mucosa that forms the innermost epithelial layer lining the lumen of the isthmus of the fallopian tube, comprising epithelial cells and underlying lamina propria.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Isthmus_of_uterine_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mucosa of fallopian tube isthmus") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (muscle layer of fallopian tube ampulla) + +AnnotationAssertion(Annotation( "PMID:33772852") Annotation( "https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla") "A muscular coat consisting of longitudinal outer and circular inner smooth muscle layers that is part of the ampulla of the fallopian tube and is responsible for rhythmic peristaltic contractions.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "muscle layer of fallopian tube ampulla") +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/thumb/7/71/Histology_of_ciliated_columnar_epithelium_of_the_fallopian_tube.jpg/250px-Histology_of_ciliated_columnar_epithelium_of_the_fallopian_tube.jpg") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (muscle layer of oviduct intramural segment) + +AnnotationAssertion(Annotation( "PMID:7004702") Annotation( "https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment") "A muscular coat composed of smooth muscle tissue that surrounds the lumen of the intramural segment of the fallopian tube, the portion of the oviduct that traverses the uterine wall between the uterine cavity and the isthmus.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "muscle layer of oviduct intramural segment") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (muscle layer of oviduct isthmus) + +AnnotationAssertion(Annotation( "PMID:25866566") Annotation( "PMID:31613440") Annotation( "https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus") "A muscular coat that is part of the isthmus of the fallopian tube, consisting of outer longitudinal and inner circular layers of smooth muscle that are responsible for peristaltic contractions propelling the ovum toward the uterus.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "FMA:18306") +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "muscle layer of oviduct isthmus") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (nerve of fallopian tube ampulla) + +AnnotationAssertion(Annotation( "PMID:34496720") Annotation( "PMID:7004702") Annotation( "https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-ampulla") "A nerve that innervates the ampulla of the fallopian tube, providing sensory and autonomic innervation to regulate tubal function.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nerve of fallopian tube ampulla") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (nerve of fallopian tube fimbria) + +AnnotationAssertion(Annotation( "PMID:16938110") Annotation( "https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-fimbria") "A nerve that is part of the fimbria of the fallopian tube, providing sensory and autonomic innervation to the fimbrial region.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nerve of fallopian tube fimbria") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (nerve of fallopian tube infundibulum) + +AnnotationAssertion(Annotation( "PMID:16938110") Annotation( "https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-infundibulum") "A nerve that innervates or is located in the uterine tube infundibulum, providing sensory and autonomic innervation to the funnel-shaped opening of the fallopian tube.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nerve of fallopian tube infundibulum") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (nerve of fallopian tube intramural segment) + +AnnotationAssertion(Annotation( "PMID:16938110") Annotation( "https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-intramural-segment") "A nerve that innervates the intramural segment of the fallopian tube, providing autonomic innervation to this portion of the uterine tube where it traverses the myometrium.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nerve of fallopian tube intramural segment") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (nerve of fallopian tube isthmus) + +AnnotationAssertion(Annotation( "PMID:27875265") Annotation( "https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-isthmus") "A nerve that innervates and is part of the isthmus of the fallopian tube.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nerve of fallopian tube isthmus") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (nerve of mesosalpinx) + +AnnotationAssertion(Annotation( "PMID:29763118") Annotation( "https://purl.org/ccf/ASCTB-TEMP_nerve-of-mesosalpinx") "A nerve that innervates the mesosalpinx, providing sensory and autonomic innervation to the serous mesenteric fold connecting the fallopian tube to the ovary.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Mesosalpinx") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nerve of mesosalpinx") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (outer muscle layer of fallopian tube ampulla) + +AnnotationAssertion(Annotation( "PMID:1964529") Annotation( "PMID:2409745") Annotation( "https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-ampulla") "A longitudinal smooth muscle layer that is part of the muscle coat of the ampulla of the fallopian tube. This layer forms the outermost component of the muscularis and works in coordination with the inner circular layer to produce the peristaltic movements necessary for transporting the oocyte and early embryo toward the uterus.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "outer muscle layer of fallopian tube ampulla") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (outer muscle layer of fallopian tube infundibulum) + +AnnotationAssertion(Annotation( "PMID:25866566") Annotation( "PMID:27875265") Annotation( "https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-infundibulum") "An organ component layer composed primarily of longitudinally arranged smooth muscle tissue that forms the outermost layer of the muscular coat of the uterine tube infundibulum, contributing to peristaltic contractions that assist in gamete and embryo transport.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "FMA:18336") +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "outer muscle layer of fallopian tube infundibulum") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (outer muscle layer of fallopian tube intramural segment) + +AnnotationAssertion(Annotation( "PMID:25866566") Annotation( "https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-intramural-segment") "The outermost longitudinal smooth muscle layer of the muscularis of the fallopian tube intramural part, which lies within the uterine wall and contributes to peristaltic contractions that propel the ovum toward the uterus.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "outer muscle layer of fallopian tube intramural segment") +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (outer muscle layer of fallopian tube isthmus) + +AnnotationAssertion(Annotation( "https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-isthmus") "A longitudinal smooth muscle layer that forms the outermost component of the muscular coat of the fallopian tube isthmus, arranged parallel to the long axis of the tube.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "outer muscle layer of fallopian tube isthmus") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (plica of fallopian tube ampulla) + +AnnotationAssertion(Annotation( "PMID:33167378") Annotation( "PMID:34496720") Annotation( "https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-ampulla") "An epithelial fold that is part of the mucosa of the fallopian tube ampulla, forming an extensive array of complex folds that increase the surface area for ciliated and secretory epithelial cells involved in oocyte transport and fertilization.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "plica of fallopian tube ampulla") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (plica of fallopian tube infundibulum) + +AnnotationAssertion(Annotation( "PMID:25994820") Annotation( "https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-infundibulum") "An epithelial fold that is part of the uterine tube infundibulum, comprising mucosal projections within the funnel-shaped abdominal extremity of the fallopian tube.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "plica of fallopian tube infundibulum") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (plica of fallopian tube intramural segment) + +AnnotationAssertion(Annotation( "PMID:16938110") Annotation( "https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-intramural-segment") "A mucosal fold that projects into the lumen of the intramural segment of the fallopian tube, formed by the elaborately folded endosalpinx characteristic of the fallopian tube mucosa.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "plica of fallopian tube intramural segment") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (plica of fallopian tube isthmus) + +AnnotationAssertion(Annotation( "PMID:27875265") Annotation( "https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-isthmus") "A mucosal fold that is part of the isthmus of the fallopian tube, formed by infolding of the mucosa to increase surface area.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "plica of fallopian tube isthmus") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (serosa of fallopian tube ampulla) + +AnnotationAssertion(Annotation( "PMID:33772852") Annotation( "https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-ampulla") "A serous membrane that forms the outermost layer of the ampulla of the fallopian tube, derived from the visceral peritoneum and continuous with the peritoneal covering.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "serosa of fallopian tube ampulla") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (serosa of fallopian tube intramural segment) + +AnnotationAssertion(Annotation( "PMID:7004702") Annotation( "https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-intramural-segment") "A serous membrane that covers the external surface of the intramural segment of the fallopian tube, the portion of the oviduct that lies within the myometrium of the uterus.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "serosa of fallopian tube intramural segment") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (serosa of fallopian tube isthmus) + +AnnotationAssertion(Annotation( "PMID:25866566") Annotation( "PMID:31613440") Annotation( "https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-isthmus") "A serous membrane that forms the outermost layer of the isthmus of the fallopian tube, derived from the visceral peritoneum.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "FMA:18306") +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "serosa of fallopian tube isthmus") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (vasculature of Fallopian tube ampulla) + +AnnotationAssertion(Annotation( "PMID:34496720") Annotation( "PMID:7004702") Annotation( "https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-ampulla") "A vasculature that is part of the ampulla of the fallopian tube, consisting of blood vessels that supply nutrients and oxygen to the ampullary tissue and support reproductive functions.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "vasculature of Fallopian tube ampulla") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (vasculature of Fallopian tube fimbria) + +AnnotationAssertion(Annotation( "PMID:25994820") Annotation( "https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-fimbria") "A network of blood vessels that supplies the fimbria of the fallopian tube, providing vascular support to the fimbrial fringe around the ostium.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "vasculature of Fallopian tube fimbria") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (vasculature of Fallopian tube infundibulum) + +AnnotationAssertion(Annotation( "PMID:25994820") Annotation( "https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-infundibulum") "A vasculature that is part of the uterine tube infundibulum, consisting of the network of blood vessels supplying the funnel-shaped abdominal extremity of the fallopian tube.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "vasculature of Fallopian tube infundibulum") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (vasculature of Fallopian tube intramural segment) + +AnnotationAssertion(Annotation( "PMID:16938110") Annotation( "https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-intramural-segment") "A vasculature that supplies blood to and drains from the intramural segment of the fallopian tube, the portion of the uterine tube that passes through the uterine wall.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "vasculature of Fallopian tube intramural segment") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (vasculature of Fallopian tube isthmus) + +AnnotationAssertion(Annotation( "PMID:27875265") Annotation( "PMID:32587423") Annotation( "https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-isthmus") "A vasculature that is part of the isthmus of the fallopian tube, consisting of the network of blood vessels supplying this region.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "vasculature of Fallopian tube isthmus") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (vasculature of mesosalpinx) + +AnnotationAssertion(Annotation( "PMID:29763118") Annotation( "doi:10.1016/B978-0-12-801238-3.64401-X") Annotation( "https://purl.org/ccf/ASCTB-TEMP_vasculature-of-mesosalpinx") "The network of blood vessels that supply and drain the mesosalpinx, the serous mesenteric fold extending from the fallopian tube to the ovary as part of the broad ligament.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Mesosalpinx") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "vasculature of mesosalpinx") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (wall of fallopian tube ampulla) + +AnnotationAssertion(Annotation( "PMID:34496720") Annotation( "PMID:7004702") Annotation( "https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla") "An anatomical wall that bounds the ampulla of the fallopian tube, comprising the serosa, muscularis, and mucosal layers that define the structure of this dilated portion of the tube.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Ampulla_of_uterine_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "wall of fallopian tube ampulla") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (wall of fallopian tube infundibulum) + +AnnotationAssertion(Annotation( "PMID:16938110") Annotation( "https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum") "An anatomical wall that is part of the uterine tube infundibulum, forming the structural boundary of the funnel-shaped abdominal extremity of the fallopian tube.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "wall of fallopian tube infundibulum") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (wall of fallopian tube intramural segment) + +AnnotationAssertion(Annotation( "PMID:16938110") Annotation( "https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment") "An anatomical wall that surrounds and defines the intramural segment of the fallopian tube, consisting of mucosal, muscular, and serosal layers in the portion of the tube embedded within the myometrium.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "wall of fallopian tube intramural segment") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (wall of fallopian tube isthmus) + +AnnotationAssertion(Annotation( "PMID:27875265") Annotation( "https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus") "An anatomical wall that is part of the isthmus of the fallopian tube, consisting of the serosa, muscular layers, and mucosa.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-25T00:00:00Z"^^xsd:dateTime) +AnnotationAssertion( "Wikipedia:Fallopian_tube") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "wall of fallopian tube isthmus") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + + +) \ No newline at end of file diff --git a/src/ontology/components/hra_fallopian_tube_groups.owl b/src/ontology/components/hra_fallopian_tube_groups.owl new file mode 100644 index 000000000..a082e2915 --- /dev/null +++ b/src/ontology/components/hra_fallopian_tube_groups.owl @@ -0,0 +1,15 @@ +Prefix(:=) +Prefix(owl:=) +Prefix(rdf:=) +Prefix(xml:=) +Prefix(xsd:=) +Prefix(rdfs:=) + + +Ontology( + +Annotation(owl:versionInfo "2026-06-01") + + + +) \ No newline at end of file diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index d867d5049..84e3e2c6c 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -57,6 +57,8 @@ treat-xrefs-as-is_a: VHOG remark: Aurelie Comte, Bill Bug, Catherine Leroy, Duncan Davidson and Trish Whetzel are also contributors. However their ORCIDs were not found. import: http://purl.obolibrary.org/obo/uberon/components/disjoint_union_over.owl import: http://purl.obolibrary.org/obo/uberon/components/hra_depiction_3d_images.owl +import: http://purl.obolibrary.org/obo/uberon/components/hra_fallopian_tube.owl +import: http://purl.obolibrary.org/obo/uberon/components/hra_fallopian_tube_groups.owl import: http://purl.obolibrary.org/obo/uberon/components/hra_skeleton.owl import: http://purl.obolibrary.org/obo/uberon/components/hra_subset.owl import: http://purl.obolibrary.org/obo/uberon/components/in-subset.owl diff --git a/src/ontology/uberon-odk.yaml b/src/ontology/uberon-odk.yaml index b8fb6b26c..681c8b2a0 100644 --- a/src/ontology/uberon-odk.yaml +++ b/src/ontology/uberon-odk.yaml @@ -178,5 +178,14 @@ components: use_template: true templates: - hra-skeleton.template.tsv + - filename: hra_fallopian_tube_groups.owl + use_template: true + templates: + - hra-fallopian-tube-groups.template.tsv + - filename: hra_fallopian_tube.owl + use_template: true + templates: + - hra-fallopian-tube.template.tsv + workflows: - docs \ No newline at end of file diff --git a/src/ontology/uberon.Makefile b/src/ontology/uberon.Makefile index 096a415bf..931cc101a 100644 --- a/src/ontology/uberon.Makefile +++ b/src/ontology/uberon.Makefile @@ -1365,6 +1365,26 @@ $(COMPONENTSDIR)/hra_skeleton.owl: $(TEMPLATEDIR)/hra-skeleton.template.tsv $(TE $(ANNOTATE_CONVERT_FILE) .PRECIOUS: $(COMPONENTSDIR)/hra_skeleton.owl +# Override ODK-generated rule to add prefix declarations needed by the template +$(COMPONENTSDIR)/hra_fallopian_tube.owl: $(TEMPLATEDIR)/hra-fallopian-tube.template.tsv $(TEMPLATEDIR)/hra-fallopian-tube-prefixes.owl $(TMPDIR)/stamp-component-hra_fallopian_tube.owl + $(ROBOT) template \ + --prefix "dcterms: http://purl.org/dc/terms/" \ + --prefix "dc: http://purl.org/dc/elements/1.1/" \ + --input $(TEMPLATEDIR)/hra-fallopian-tube-prefixes.owl \ + --template $(TEMPLATEDIR)/hra-fallopian-tube.template.tsv \ + $(ANNOTATE_CONVERT_FILE) +.PRECIOUS: $(COMPONENTSDIR)/hra_fallopian_tube.owl + +# Override ODK-generated rule to add prefix declarations needed by the template +$(COMPONENTSDIR)/hra_fallopian_tube_groups.owl: $(TEMPLATEDIR)/hra-fallopian-tube-groups.template.tsv $(TEMPLATEDIR)/hra-fallopian-tube-prefixes.owl $(TMPDIR)/stamp-component-hra_fallopian_tube_groups.owl + $(ROBOT) template \ + --prefix "dcterms: http://purl.org/dc/terms/" \ + --prefix "dc: http://purl.org/dc/elements/1.1/" \ + --input $(TEMPLATEDIR)/hra-fallopian-tube-prefixes.owl \ + --template $(TEMPLATEDIR)/hra-fallopian-tube-groups.template.tsv \ + $(ANNOTATE_CONVERT_FILE) +.PRECIOUS: $(COMPONENTSDIR)/hra_fallopian_tube_groups.owl + $(COMPONENTSDIR)/vasculature_class.owl: $(TEMPLATEDIR)/vasculature_class.owl $(ROBOT) merge -i $< annotate --ontology-iri $(ONTBASE)/$@ --output $@ diff --git a/src/templates/hra-fallopian-tube-groups.template.tsv b/src/templates/hra-fallopian-tube-groups.template.tsv new file mode 100644 index 000000000..dff359c07 --- /dev/null +++ b/src/templates/hra-fallopian-tube-groups.template.tsv @@ -0,0 +1,2 @@ +ID LABEL Definition def_xref genus location In_subset Date Contributor Present_in_taxon Wikipedia_image xref +ID LABEL A IAO:0000115 >A oboInOwl:hasDbXref SPLIT=| EC % EC BFO:0000050 some % AI oboInOwl:inSubset AT dcterms:date^^xsd:dateTime AI dcterms:contributor AI RO:0002175 A foaf:depiction A oboInOwl:hasDbXref SPLIT=| diff --git a/src/templates/hra-fallopian-tube-prefixes.owl b/src/templates/hra-fallopian-tube-prefixes.owl new file mode 100644 index 000000000..72c2bd7b4 --- /dev/null +++ b/src/templates/hra-fallopian-tube-prefixes.owl @@ -0,0 +1,20 @@ +Prefix(:=) +Prefix(owl:=) +Prefix(rdf:=) +Prefix(xml:=) +Prefix(xsd:=) +Prefix(rdfs:=) + +Ontology( + +Declaration(ObjectProperty()) +Declaration(ObjectProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) + +) diff --git a/src/templates/hra-fallopian-tube-reports/candidates.tsv b/src/templates/hra-fallopian-tube-reports/candidates.tsv new file mode 100644 index 000000000..e49e00d93 --- /dev/null +++ b/src/templates/hra-fallopian-tube-reports/candidates.tsv @@ -0,0 +1,6 @@ +label as_iri uberon_id note +mucosa of fallopian tube infundibulum UBERON:0005049 confirmed_match (confidence: high) +muscle layer of oviduct infundibulum UBERON:0007182 confirmed_match (confidence: high) +serosa of fallopian tube infundibulum UBERON:0007181 confirmed_match (confidence: high) +inner muscle layer of fallopian tube infundibulum UBERON:0012368 possible_match (UBERON:0012368 'circular muscle layer of muscular coat' is the general term for inner circular muscle layers with synonyms 'inner muscularis' and 'inner muscularis layer'. Could serve as genus for this specific infundibulum circular layer.) +outer muscle layer of fallopian tube infundibulum UBERON:0012369 possible_match (UBERON:0012369 'longitudinal muscle layer of muscular coat' is the general term for outer longitudinal muscle layers with synonyms 'outer muscularis' and 'outer muscularis layer'. Could serve as genus for this specific infundibulum longitudinal layer.) diff --git a/src/templates/hra-fallopian-tube-reports/errors.tsv b/src/templates/hra-fallopian-tube-reports/errors.tsv new file mode 100644 index 000000000..8f7cc2e99 --- /dev/null +++ b/src/templates/hra-fallopian-tube-reports/errors.tsv @@ -0,0 +1,38 @@ +label as_iri issue_type parent_id parent_label detail +basement membrane of fallopian tube ampulla https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-ampulla asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla wall of Fallopian tube ampulla Parent not yet in UBERON; subagent should search OLS4 for correct parent +basement membrane of fallopian tube infundibulum https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-infundibulum asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum wall of Fallopian tube infundibulum Parent not yet in UBERON; subagent should search OLS4 for correct parent +basement membrane of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment wall of Fallopian tube intramural segment Parent not yet in UBERON; subagent should search OLS4 for correct parent +basement membrane of fallopian tube isthmus https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-isthmus asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus wall of Fallopian tube isthmus Parent not yet in UBERON; subagent should search OLS4 for correct parent +fluid of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube intramural segment of Fallopian tube Parent not yet in UBERON; subagent should search OLS4 for correct parent +inner muscle layer of fallopian tube ampulla https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-ampulla asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla muscle layer of oviduct ampulla Parent not yet in UBERON; subagent should search OLS4 for correct parent +inner muscle layer of fallopian tube infundibulum https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-infundibulum asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum muscle layer of oviduct infundibulum Parent not yet in UBERON; subagent should search OLS4 for correct parent +inner muscle layer of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment muscle layer of oviduct intramural segment Parent not yet in UBERON; subagent should search OLS4 for correct parent +inner muscle layer of fallopian tube isthmus https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-isthmus asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus muscle layer of oviduct isthmus Parent not yet in UBERON; subagent should search OLS4 for correct parent +lamina propria of Fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube intramural segment of Fallopian tube Parent not yet in UBERON; subagent should search OLS4 for correct parent +lymphatic of mesosalpinx https://purl.org/ccf/ASCTB-TEMP_lymphatic-of-mesosalpinx asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx serous membrane lining of mesosalpinx Parent not yet in UBERON; subagent should search OLS4 for correct parent +middle muscle layer of fallopian tube ampulla https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-ampulla asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla muscle layer of oviduct ampulla Parent not yet in UBERON; subagent should search OLS4 for correct parent +middle muscle layer of fallopian tube infundibulum https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-infundibulum asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum muscle layer of oviduct infundibulum Parent not yet in UBERON; subagent should search OLS4 for correct parent +middle muscle layer of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment muscle layer of oviduct intramural segment Parent not yet in UBERON; subagent should search OLS4 for correct parent +middle muscle layer of fallopian tube isthmus https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-isthmus asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus muscle layer of oviduct isthmus Parent not yet in UBERON; subagent should search OLS4 for correct parent +mucosa of fallopian tube ampulla https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-ampulla asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-ampulla plica of Fallopian tube ampulla Parent not yet in UBERON; subagent should search OLS4 for correct parent +mucosa of fallopian tube infundibulum https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-infundibulum asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-infundibulum plica of Fallopian tube infundibulum Parent not yet in UBERON; subagent should search OLS4 for correct parent +mucosa of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-intramural-segment plica of Fallopian tube intramural segment Parent not yet in UBERON; subagent should search OLS4 for correct parent +mucosa of fallopian tube isthmus https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-isthmus asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-isthmus plica of Fallopian tube isthmus Parent not yet in UBERON; subagent should search OLS4 for correct parent +muscle layer of oviduct ampulla https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla wall of Fallopian tube ampulla Parent not yet in UBERON; subagent should search OLS4 for correct parent +muscle layer of oviduct infundibulum https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum wall of Fallopian tube infundibulum Parent not yet in UBERON; subagent should search OLS4 for correct parent +muscle layer of oviduct intramural segment https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment wall of Fallopian tube intramural segment Parent not yet in UBERON; subagent should search OLS4 for correct parent +muscle layer of oviduct isthmus https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus wall of Fallopian tube isthmus Parent not yet in UBERON; subagent should search OLS4 for correct parent +nerve of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube intramural segment of Fallopian tube Parent not yet in UBERON; subagent should search OLS4 for correct parent +nerve of mesosalpinx https://purl.org/ccf/ASCTB-TEMP_nerve-of-mesosalpinx asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx serous membrane lining of mesosalpinx Parent not yet in UBERON; subagent should search OLS4 for correct parent +outer muscle layer of fallopian tube ampulla https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-ampulla asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla muscle layer of oviduct ampulla Parent not yet in UBERON; subagent should search OLS4 for correct parent +outer muscle layer of fallopian tube infundibulum https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-infundibulum asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum muscle layer of oviduct infundibulum Parent not yet in UBERON; subagent should search OLS4 for correct parent +outer muscle layer of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment muscle layer of oviduct intramural segment Parent not yet in UBERON; subagent should search OLS4 for correct parent +outer muscle layer of fallopian tube isthmus https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-isthmus asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus muscle layer of oviduct isthmus Parent not yet in UBERON; subagent should search OLS4 for correct parent +plica of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube intramural segment of Fallopian tube Parent not yet in UBERON; subagent should search OLS4 for correct parent +serosa of fallopian tube ampulla https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-ampulla asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla wall of Fallopian tube ampulla Parent not yet in UBERON; subagent should search OLS4 for correct parent +serosa of fallopian tube infundibulum https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-infundibulum asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum wall of Fallopian tube infundibulum Parent not yet in UBERON; subagent should search OLS4 for correct parent +serosa of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment wall of Fallopian tube intramural segment Parent not yet in UBERON; subagent should search OLS4 for correct parent +serosa of fallopian tube isthmus https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-isthmus asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus wall of Fallopian tube isthmus Parent not yet in UBERON; subagent should search OLS4 for correct parent +vasculature of Fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube intramural segment of Fallopian tube Parent not yet in UBERON; subagent should search OLS4 for correct parent +vasculature of mesosalpinx https://purl.org/ccf/ASCTB-TEMP_vasculature-of-mesosalpinx asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx serous membrane lining of mesosalpinx Parent not yet in UBERON; subagent should search OLS4 for correct parent +wall of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube intramural segment of Fallopian tube Parent not yet in UBERON; subagent should search OLS4 for correct parent diff --git a/src/templates/hra-fallopian-tube-reports/input.tsv b/src/templates/hra-fallopian-tube-reports/input.tsv new file mode 100644 index 000000000..faa593f24 --- /dev/null +++ b/src/templates/hra-fallopian-tube-reports/input.tsv @@ -0,0 +1,64 @@ +table as_iri label uberon_id parent_id parent_label references term_type + https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-ampulla basement membrane of fallopian tube ampulla https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla wall of Fallopian tube ampulla leaf + https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-infundibulum basement membrane of fallopian tube infundibulum https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum wall of Fallopian tube infundibulum leaf + https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-intramural-segment basement membrane of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment wall of Fallopian tube intramural segment leaf + https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-isthmus basement membrane of fallopian tube isthmus https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus wall of Fallopian tube isthmus leaf + https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-ampulla fluid of fallopian tube ampulla UBERON:0012648 ampulla of fallopian tube leaf + https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-fimbria fluid of fallopian tube fimbria UBERON:8410010 fimbria of fallopian tube leaf + https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-infundibulum fluid of fallopian tube infundibulum UBERON:0003984 uterine tube infundibulum leaf + https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-intramural-segment fluid of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube intramural segment of Fallopian tube leaf + https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-isthmus fluid of fallopian tube isthmus UBERON:0016632 isthmus of fallopian tube leaf + https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-ampulla inner muscle layer of fallopian tube ampulla https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla muscle layer of oviduct ampulla leaf + https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-infundibulum inner muscle layer of fallopian tube infundibulum https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum muscle layer of oviduct infundibulum leaf + https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-intramural-segment inner muscle layer of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment muscle layer of oviduct intramural segment leaf + https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-isthmus inner muscle layer of fallopian tube isthmus https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus muscle layer of oviduct isthmus leaf + https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube intramural segment of fallopian tube UBERON:0003889 fallopian tube leaf + https://purl.org/ccf/ASCTB-TEMP_lamina-propria-fallopian-tube-ampulla lamina propria Fallopian tube ampulla UBERON:0012648 ampulla of fallopian tube https://doi.org/10.1016/j.celrep.2021.108978, PMID:25994820, PMID:16938110 leaf + https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-fimbria lamina propria of Fallopian tube fimbria UBERON:8410010 fimbria of fallopian tube https://doi.org/10.1016/j.celrep.2021.108978, PMID:25994820, PMID:16938110 leaf + https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-infundibulum lamina propria of Fallopian tube infundibulum UBERON:0003984 uterine tube infundibulum https://doi.org/10.1016/j.celrep.2021.108978, PMID:25994820, PMID:16938110 leaf + https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-intramural-segment lamina propria of Fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube intramural segment of Fallopian tube https://doi.org/10.1016/j.celrep.2021.108978, PMID:16938110, PMID:25994820 leaf + https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-isthmus lamina propria of Fallopian tube isthmus UBERON:0016632 isthmus of fallopian tube https://doi.org/10.1016/j.celrep.2021.108978, PMID:25994820, PMID:16938110 leaf + https://purl.org/ccf/ASCTB-TEMP_lymphatic-of-mesosalpinx lymphatic of mesosalpinx https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx serous membrane lining of mesosalpinx leaf + https://purl.org/ccf/ASCTB-TEMP_mesothelium-of-mesosalpinx mesothelium of mesosalpinx UBERON:0012331 mesosalpinx https://doi.org/10.1016/B978-0-12-801238-3.64401-X leaf + https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-ampulla middle muscle layer of fallopian tube ampulla https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla muscle layer of oviduct ampulla leaf + https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-infundibulum middle muscle layer of fallopian tube infundibulum https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum muscle layer of oviduct infundibulum leaf + https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-intramural-segment middle muscle layer of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment muscle layer of oviduct intramural segment leaf + https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-isthmus middle muscle layer of fallopian tube isthmus https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus muscle layer of oviduct isthmus leaf + https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-ampulla mucosa of fallopian tube ampulla https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-ampulla plica of Fallopian tube ampulla leaf + https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-fimbria mucosa of fallopian tube fimbria UBERON:8410010 fimbria of uterine tube leaf + https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-infundibulum mucosa of fallopian tube infundibulum https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-infundibulum plica of Fallopian tube infundibulum leaf + https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-intramural-segment mucosa of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-intramural-segment plica of Fallopian tube intramural segment leaf + https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-isthmus mucosa of fallopian tube isthmus https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-isthmus plica of Fallopian tube isthmus leaf + https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla muscle layer of oviduct ampulla https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla wall of Fallopian tube ampulla leaf + https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum muscle layer of oviduct infundibulum https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum wall of Fallopian tube infundibulum leaf + https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment muscle layer of oviduct intramural segment https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment wall of Fallopian tube intramural segment leaf + https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus muscle layer of oviduct isthmus https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus wall of Fallopian tube isthmus leaf + https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-ampulla nerve of fallopian tube ampulla UBERON:0012648 ampulla of fallopian tube leaf + https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-fimbria nerve of fallopian tube fimbria UBERON:8410010 fimbria of fallopian tube leaf + https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-infundibulum nerve of fallopian tube infundibulum UBERON:0003984 uterine tube infundibulum leaf + https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-intramural-segment nerve of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube intramural segment of Fallopian tube leaf + https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-isthmus nerve of fallopian tube isthmus UBERON:0016632 isthmus of fallopian tube leaf + https://purl.org/ccf/ASCTB-TEMP_nerve-of-mesosalpinx nerve of mesosalpinx https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx serous membrane lining of mesosalpinx leaf + https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-ampulla outer muscle layer of fallopian tube ampulla https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla muscle layer of oviduct ampulla leaf + https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-infundibulum outer muscle layer of fallopian tube infundibulum https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum muscle layer of oviduct infundibulum leaf + https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-intramural-segment outer muscle layer of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment muscle layer of oviduct intramural segment leaf + https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-isthmus outer muscle layer of fallopian tube isthmus https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus muscle layer of oviduct isthmus leaf + https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-ampulla plica of fallopian tube ampulla UBERON:0012648 ampulla of fallopian tube leaf + https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-infundibulum plica of fallopian tube infundibulum UBERON:0003984 uterine tube infundibulum leaf + https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-intramural-segment plica of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube intramural segment of Fallopian tube leaf + https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-isthmus plica of fallopian tube isthmus UBERON:0016632 isthmus of fallopian tube leaf + https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-ampulla serosa of fallopian tube ampulla https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla wall of Fallopian tube ampulla leaf + https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-infundibulum serosa of fallopian tube infundibulum https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum wall of Fallopian tube infundibulum leaf + https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-intramural-segment serosa of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment wall of Fallopian tube intramural segment leaf + https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-isthmus serosa of fallopian tube isthmus https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus wall of Fallopian tube isthmus leaf + https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx serous membrane lining of mesosalpinx UBERON:0012331 mesosalpinx leaf + https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-ampulla vasculature of Fallopian tube ampulla UBERON:0012648 ampulla of fallopian tube leaf + https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-fimbria vasculature of Fallopian tube fimbria UBERON:8410010 fimbria of fallopian tube leaf + https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-infundibulum vasculature of Fallopian tube infundibulum UBERON:0003984 uterine tube infundibulum leaf + https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-intramural-segment vasculature of Fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube intramural segment of Fallopian tube leaf + https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-isthmus vasculature of Fallopian tube isthmus UBERON:0016632 isthmus of fallopian tube leaf + https://purl.org/ccf/ASCTB-TEMP_vasculature-of-mesosalpinx vasculature of mesosalpinx https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx serous membrane lining of mesosalpinx leaf + https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla wall of fallopian tube ampulla UBERON:0012648 ampulla of fallopian tube leaf + https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum wall of fallopian tube infundibulum UBERON:0003984 uterine tube infundibulum leaf + https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment wall of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube intramural segment of Fallopian tube leaf + https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus wall of fallopian tube isthmus UBERON:0016632 isthmus of fallopian tube leaf diff --git a/src/templates/hra-fallopian-tube-reports/manual_curation.tsv b/src/templates/hra-fallopian-tube-reports/manual_curation.tsv new file mode 100644 index 000000000..e83e4c5f4 --- /dev/null +++ b/src/templates/hra-fallopian-tube-reports/manual_curation.tsv @@ -0,0 +1,4 @@ +label definition reason similar_terms suggestion +serous membrane lining of mesosalpinx The serous membrane structure that comprises the mesosalpinx, consisting of a mesothelial epithelial layer and underlying connective tissue that extends from the fallopian tube to the ovary as part of the broad ligament. Mesosalpinx (UBERON:0012331) is already defined as a serous membrane. 'Serous membrane lining of mesosalpinx' appears to be redundant with the parent term itself, or possibly referring to the same structure. The relationship between this term and mesosalpinx needs clarification - it may be an exact synonym, or the source may have intended to refer to a specific layer component. UBERON:0012331=mesosalpinx; UBERON:0001136=mesothelium; UBERON:0000042=serous membrane This term should likely be either: (1) merged as an exact synonym with UBERON:0012331 (mesosalpinx), since both refer to the serous membrane structure; or (2) if it's meant to denote a specific connective tissue sublayer, that intent should be clarified and a more precise term created (e.g., 'connective tissue layer of mesosalpinx'). The current formulation 'serous membrane lining of serous membrane' is logically redundant. Recommend curator review the source reference (doi:10.1016/B978-0-12-801238-3.64401-X) to determine the intended meaning. +All three terms (inner/middle/outer muscle layers) Standard anatomical literature describes fallopian tube muscularis as having TWO layers (inner circular, outer longitudinal), not three. PMID:1168021 (Daniel et al. 1975) notes 'In the ampulla distinct muscle layers were absent' with bundles oriented in different axes. PMID:2409745 (Forman & Andersson 1985) describes 'outer, longitudinal and the inner, circular smooth muscle layer' at ampullary-isthmic junction - again, two layers only. The ASCTB source uses a three-layer model (inner/middle/outer) that does not align with established histological nomenclature for the fallopian tube ampulla. Curator should verify whether these represent genuine anatomical subdivisions documented in specialized literature, or if the source model needs revision. The middle layer lacks any supporting evidence in the literature examined. UBERON:0008857=stomach smooth muscle circular layer; UBERON:0009960=esophagus smooth muscle circular layer; UBERON:0012368=circular muscle layer of muscular coat; UBERON:0012369=longitudinal muscle layer of muscular coat; UBERON:0006642=muscle layer of oviduct +all three terms (inner, middle, outer muscle layers) See definitions above Anatomical literature describes the fallopian tube muscularis as having TWO layers only: an inner circular layer and an outer longitudinal layer. The source data (ASCTB) specifies THREE layers (inner, middle, outer), which contradicts standard anatomical descriptions in Wikipedia (https://en.wikipedia.org/wiki/Fallopian_tube), StatPearls (PMID:31613440), and multiple anatomy references. There is no 'middle' muscle layer in standard fallopian tube anatomy. UBERON:0012368=circular muscle layer of muscular coat; UBERON:0012369=longitudinal muscle layer of muscular coat Three options for curator: (1) If the source data is incorrect, create only TWO terms mirroring UBERON:0012368 and UBERON:0012369 with part_of relationships to a new 'fallopian tube intramural segment' parent term. Use intersection_of patterns like 'UBERON:0012368 ! circular muscle layer of muscular coat' AND 'part_of '. (2) If literature exists for a three-layer model specific to the intramural segment that differs from the general two-layer pattern, document that literature and create three terms. (3) Contact ASCTB curators to verify whether 'middle' is an error. diff --git a/src/templates/hra-fallopian-tube-reports/name_corrections.tsv b/src/templates/hra-fallopian-tube-reports/name_corrections.tsv new file mode 100644 index 000000000..1ae19d393 --- /dev/null +++ b/src/templates/hra-fallopian-tube-reports/name_corrections.tsv @@ -0,0 +1,6 @@ +source_label corrected_label reason +middle muscle layer of fallopian tube infundibulum TERM QUESTIONABLE Standard anatomical descriptions of fallopian tube muscularis describe only TWO distinct muscle layers: inner circular and outer longitudinal smooth muscle (Wikipedia:Fallopian_tube, PMID:25866566, Gray's Anatomy). No 'middle' muscle layer is described in reviewed anatomical literature. The source nomenclature may reflect a non-standard subdivision or regional variation not recognized in current anatomical nomenclature. Recommend curator review: this term may need to be rejected, or if valid anatomical evidence exists for a middle layer distinct from circular and longitudinal, that evidence should be cited. +plica of Fallopian tube ampulla mucosa of fallopian tube ampulla The source parent term 'plica of Fallopian tube ampulla' is non-standard. Plica (fold) refers to the complex mucosal folds that are characteristic features of the ampulla mucosa, not a separate anatomical structure. The mucosa itself forms these folds. The correct anatomical parent is the ampulla of fallopian tube (UBERON:0012648). +mucosa of fallopian tube intramural segment mucosa of intramural part of fallopian tube UBERON uses 'part' rather than 'segment' for anatomical subdivisions (cf. 'mucosa of infundibulum of uterine tube' UBERON:0005049). The suggested name aligns with Wikipedia terminology ('intramural part or interstitial part') and UBERON naming conventions. +parent labeled as 'plica of Fallopian tube isthmus' in source isthmus of fallopian tube (UBERON:0016632) Source data confusion: 'plica' (fold) vs 'mucosa' (epithelial layer) are distinct anatomical structures. The term 'mucosa of fallopian tube isthmus' correctly refers to the mucosal lining, and its parent is the isthmus itself (UBERON:0016632), not a plica. A plica would be a fold within the mucosa, not the parent structure. +muscle layer of oviduct ampulla muscle layer of fallopian tube ampulla For consistency with anatomical nomenclature and other UBERON terms for fallopian tube structures. 'Oviduct' and 'fallopian tube' are used interchangeably, but in mammalian anatomy 'fallopian tube' is preferred. diff --git a/src/templates/hra-fallopian-tube.template.tsv b/src/templates/hra-fallopian-tube.template.tsv new file mode 100644 index 000000000..9701c9daf --- /dev/null +++ b/src/templates/hra-fallopian-tube.template.tsv @@ -0,0 +1,60 @@ +ID LABEL Definition def_xref is_a part_of develops_from In_subset Date Contributor Present_in_taxon Wikipedia_image xref +ID LABEL A IAO:0000115 >A oboInOwl:hasDbXref SPLIT=| SC % SC BFO:0000050 some % SC RO:0002202 some % AI oboInOwl:inSubset AT dcterms:date^^xsd:dateTime AI dcterms:contributor AI RO:0002175 A foaf:depiction A oboInOwl:hasDbXref SPLIT=| +http://purl.obolibrary.org/obo/UBERON_8930037 basement membrane of fallopian tube ampulla An acellular membrane that lies adjacent to the epithelial cells of the fallopian tube ampulla mucosa, situated between the luminal epithelium and the underlying lamina propria of the ampulla. https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-ampulla|PMID:33772852 UBERON:0005769 UBERON:0012648 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930038 basement membrane of fallopian tube infundibulum An acellular basement membrane that underlies the epithelium of the fallopian tube infundibulum, composed of basal lamina and reticular lamina that anchors the ciliated columnar epithelium to the underlying connective tissue. https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-infundibulum|PMID:34496720|PMID:7004702|PMID:22918811 UBERON:0005769 UBERON:0003984 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Basement_membrane|Wikipedia:Infundibulum_of_uterine_tube +http://purl.obolibrary.org/obo/UBERON_8930039 basement membrane of fallopian tube intramural segment A basement membrane of epithelium that underlies the epithelial cells lining the intramural segment of the fallopian tube, the narrow tubular portion that penetrates the myometrial wall of the uterus. https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-intramural-segment|PMID:7004702 UBERON:0005769 UBERON:0036441 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930040 basement membrane of fallopian tube isthmus An acellular membrane that is part of the epithelium of the isthmus of the fallopian tube, lying adjacent to the epithelial cells between the epithelial layer and the underlying lamina propria. https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-isthmus|PMID:31613440|PMID:25866566 UBERON:0005769 UBERON:0016632 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube|FMA:18306 +http://purl.obolibrary.org/obo/UBERON_8930041 fluid of fallopian tube ampulla A bodily fluid that fills the lumen of the fallopian tube ampulla, providing the aqueous medium in which fertilization occurs and through which the oocyte and sperm move. https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-ampulla|PMID:33167378|PMID:34496720 UBERON:0006314 UBERON:0012648 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Ampulla_of_uterine_tube +http://purl.obolibrary.org/obo/UBERON_8930042 fluid of fallopian tube fimbria A bodily fluid that is located in or secreted by the fimbria of the fallopian tube, which may facilitate the capture and transport of the ovum from the ovary into the oviduct. https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-fimbria|PMID:25994820 UBERON:0006314 UBERON:8410010 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930043 fluid of fallopian tube infundibulum A bodily fluid that is located in the infundibulum of the fallopian tube, which accumulates in the funnel-shaped opening where the ovulated egg enters the uterine tube. https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-infundibulum|PMID:25994820 UBERON:0006314 UBERON:0003984 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930044 fluid of fallopian tube intramural segment A bodily fluid that is contained within the lumen of the intramural segment of the fallopian tube, providing a medium for the passage of gametes and early embryos through this narrow tubular portion. https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-intramural-segment|PMID:16938110 UBERON:0006314 UBERON:8930050 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930045 fluid of fallopian tube isthmus A bodily fluid that is contained within the lumen of the isthmus of the fallopian tube. https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-isthmus UBERON:0006314 UBERON:0016632 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930046 inner muscle layer of fallopian tube ampulla A circular smooth muscle layer that is part of the muscle coat of the ampulla of the fallopian tube. This layer forms the innermost component of the muscularis and, together with the outer longitudinal layer, generates peristaltic contractions that facilitate oocyte and embryo transport through the ampullar region. https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-ampulla|PMID:2409745|PMID:1964529 UBERON:0012368 UBERON:0006642 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930047 inner muscle layer of fallopian tube infundibulum An organ component layer composed primarily of circularly arranged smooth muscle tissue that forms the innermost layer of the muscular coat of the uterine tube infundibulum, contributing to peristaltic contractions that assist in gamete and embryo transport. https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-infundibulum|PMID:25866566|PMID:27875265 UBERON:0004923 UBERON:0007182 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube|FMA:18336 +http://purl.obolibrary.org/obo/UBERON_8930048 inner muscle layer of fallopian tube intramural segment The innermost circular smooth muscle layer of the muscularis of the fallopian tube intramural part, which lies within the uterine wall and contributes to peristaltic contractions that propel the ovum toward the uterus. https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-intramural-segment|PMID:25866566 UBERON:0006660 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930049 inner muscle layer of fallopian tube isthmus A circular smooth muscle layer that forms the innermost component of the muscular coat of the fallopian tube isthmus, contributing to peristaltic contractions that propel the oocyte toward the uterus. https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-isthmus UBERON:0012368 UBERON:0016632 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930050 intramural segment of fallopian tube A subdivision of the fallopian tube that lies within the myometrium, the muscular wall of the uterus, connecting the isthmus to the uterine cavity. This is the narrowest and shortest segment of the fallopian tube, measuring approximately 0.7 mm in diameter and 1 cm in length. https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube|PMID:2565256|Wikipedia:Fallopian_tube UBERON:0013515 UBERON:0003889 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930051 lamina propria Fallopian tube ampulla A lamina propria that is part of the mucosa of the fallopian tube ampulla, consisting of a thin layer of loose connective tissue underlying the luminal epithelium and containing blood vessels and immune cells. https://doi.org/10.1016/j.celrep.2021.108978|PMID:25994820|PMID:16938110|https://purl.org/ccf/ASCTB-TEMP_lamina-propria-fallopian-tube-ampulla|PMID:7004702 UBERON:0000030 UBERON:0012648 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930052 lamina propria of Fallopian tube fimbria A connective tissue layer underlying the epithelium of the fimbria of the fallopian tube, providing structural support to the fimbrial fringes that extend toward the ovary. https://doi.org/10.1016/j.celrep.2021.108978|PMID:25994820|PMID:16938110|https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-fimbria UBERON:0000030 UBERON:8410010 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930053 lamina propria of Fallopian tube infundibulum A lamina propria that is part of the uterine tube infundibulum, providing structural support to the mucosal layer of the funnel-shaped abdominal extremity of the fallopian tube. https://doi.org/10.1016/j.celrep.2021.108978|PMID:25994820|PMID:16938110|https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-infundibulum UBERON:0000030 UBERON:0003984 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930054 lamina propria of Fallopian tube intramural segment A lamina propria that forms the connective tissue layer beneath the epithelium in the mucosa of the intramural segment of the fallopian tube, which is the portion of the uterine tube that passes through the wall of the uterus. https://doi.org/10.1016/j.celrep.2021.108978|PMID:16938110|PMID:25994820|https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-intramural-segment UBERON:0000030 UBERON:8930050 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 FMA:18319 +http://purl.obolibrary.org/obo/UBERON_8930055 lamina propria of Fallopian tube isthmus A lamina propria that is part of the isthmus of the fallopian tube, consisting of a thin layer of loose connective tissue underlying the luminal epithelium. https://doi.org/10.1016/j.celrep.2021.108978|PMID:25994820|PMID:16938110|https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-isthmus UBERON:0000030 UBERON:0016632 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930056 lymphatic of mesosalpinx A lymphatic vessel that drains lymph from the mesosalpinx, the serous mesenteric fold extending from the fallopian tube to the ovary. https://purl.org/ccf/ASCTB-TEMP_lymphatic-of-mesosalpinx|PMID:29763118 UBERON:0001473 UBERON:0012331 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Mesosalpinx +http://purl.obolibrary.org/obo/UBERON_8930057 mesothelium of mesosalpinx A mesothelium that forms the epithelial lining of the mesosalpinx, the portion of the broad ligament surrounding the fallopian tube. https://doi.org/10.1016/B978-0-12-801238-3.64401-X|https://purl.org/ccf/ASCTB-TEMP_mesothelium-of-mesosalpinx|PMID:29763118 UBERON:0001136 UBERON:0012331 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Mesosalpinx +http://purl.obolibrary.org/obo/UBERON_8930058 middle muscle layer of fallopian tube ampulla A smooth muscle layer that is part of the muscle coat of the ampulla of the fallopian tube, situated between the inner circular and outer longitudinal muscle layers. This intermediate layer contributes to the contractile function of the ampulla during gamete and early embryo transport. https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-ampulla|PMID:2409745|PMID:24176284 UBERON:0006660 UBERON:0006642 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930060 middle muscle layer of fallopian tube intramural segment A smooth muscle layer of the muscularis of the fallopian tube intramural part, located between the inner circular and outer longitudinal muscle layers. https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-intramural-segment|PMID:25866566 UBERON:0006660 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930061 middle muscle layer of fallopian tube isthmus A smooth muscle layer situated between the inner circular and outer longitudinal muscle layers of the fallopian tube isthmus, contributing to the muscular wall that facilitates peristalsis. https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-isthmus UBERON:0006660 UBERON:0016632 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930062 mucosa of fallopian tube ampulla A mucosa that is part of an ampulla of fallopian tube. The mucosa of the ampulla is characterized by an extensive array of complex mucosal folds (plicae), and is composed of simple columnar epithelium containing ciliated cells, secretory cells, and peg cells overlying a thin lamina propria. https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-ampulla|PMID:42032991 UBERON:0000344 UBERON:0012648 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930063 mucosa of fallopian tube fimbria A mucosal lining of the fimbria of the fallopian tube, comprising the epithelium and underlying lamina propria of the fimbrial fringes. https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-fimbria|PMID:25994820 UBERON:0000344 UBERON:8410010 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930065 mucosa of intramural part of fallopian tube A mucosa that is part of the intramural segment of the fallopian tube. The intramural (or interstitial) part of the fallopian tube is the narrowest segment that lies within the myometrium, the muscular wall of the uterus, extending from the uterine cavity to where it opens into the broader isthmus of the tube. https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-intramural-segment|PMID:42123609|PMID:42088488 UBERON:0000344 UBERON:8930050 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930066 mucosa of fallopian tube isthmus A mucosa that forms the innermost epithelial layer lining the lumen of the isthmus of the fallopian tube, comprising epithelial cells and underlying lamina propria. https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-isthmus|PMID:25595539|PMID:28413873 UBERON:0000344 UBERON:0016632 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Isthmus_of_uterine_tube +http://purl.obolibrary.org/obo/UBERON_8930067 muscle layer of fallopian tube ampulla A muscular coat consisting of longitudinal outer and circular inner smooth muscle layers that is part of the ampulla of the fallopian tube and is responsible for rhythmic peristaltic contractions. https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla|PMID:33772852 UBERON:0006660 UBERON:0012648 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 https://upload.wikimedia.org/wikipedia/commons/thumb/7/71/Histology_of_ciliated_columnar_epithelium_of_the_fallopian_tube.jpg/250px-Histology_of_ciliated_columnar_epithelium_of_the_fallopian_tube.jpg Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930069 muscle layer of oviduct intramural segment A muscular coat composed of smooth muscle tissue that surrounds the lumen of the intramural segment of the fallopian tube, the portion of the oviduct that traverses the uterine wall between the uterine cavity and the isthmus. https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment|PMID:7004702 UBERON:0006660 UBERON:0036441 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930070 muscle layer of oviduct isthmus A muscular coat that is part of the isthmus of the fallopian tube, consisting of outer longitudinal and inner circular layers of smooth muscle that are responsible for peristaltic contractions propelling the ovum toward the uterus. https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus|PMID:31613440|PMID:25866566 UBERON:0006660 UBERON:0016632 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube|FMA:18306 +http://purl.obolibrary.org/obo/UBERON_8930071 nerve of fallopian tube ampulla A nerve that innervates the ampulla of the fallopian tube, providing sensory and autonomic innervation to regulate tubal function. https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-ampulla|PMID:7004702|PMID:34496720 UBERON:0001021 UBERON:0012648 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930072 nerve of fallopian tube fimbria A nerve that is part of the fimbria of the fallopian tube, providing sensory and autonomic innervation to the fimbrial region. https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-fimbria|PMID:16938110 UBERON:0001021 UBERON:8410010 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930073 nerve of fallopian tube infundibulum A nerve that innervates or is located in the uterine tube infundibulum, providing sensory and autonomic innervation to the funnel-shaped opening of the fallopian tube. https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-infundibulum|PMID:16938110 UBERON:0001021 UBERON:0003984 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930074 nerve of fallopian tube intramural segment A nerve that innervates the intramural segment of the fallopian tube, providing autonomic innervation to this portion of the uterine tube where it traverses the myometrium. https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-intramural-segment|PMID:16938110 UBERON:0001021 UBERON:8930050 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930075 nerve of fallopian tube isthmus A nerve that innervates and is part of the isthmus of the fallopian tube. https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-isthmus|PMID:27875265 UBERON:0001021 UBERON:0016632 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930076 nerve of mesosalpinx A nerve that innervates the mesosalpinx, providing sensory and autonomic innervation to the serous mesenteric fold connecting the fallopian tube to the ovary. https://purl.org/ccf/ASCTB-TEMP_nerve-of-mesosalpinx|PMID:29763118 UBERON:0001021 UBERON:0012331 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Mesosalpinx +http://purl.obolibrary.org/obo/UBERON_8930077 outer muscle layer of fallopian tube ampulla A longitudinal smooth muscle layer that is part of the muscle coat of the ampulla of the fallopian tube. This layer forms the outermost component of the muscularis and works in coordination with the inner circular layer to produce the peristaltic movements necessary for transporting the oocyte and early embryo toward the uterus. https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-ampulla|PMID:2409745|PMID:1964529 UBERON:0012369 UBERON:0006642 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930078 outer muscle layer of fallopian tube infundibulum An organ component layer composed primarily of longitudinally arranged smooth muscle tissue that forms the outermost layer of the muscular coat of the uterine tube infundibulum, contributing to peristaltic contractions that assist in gamete and embryo transport. https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-infundibulum|PMID:25866566|PMID:27875265 UBERON:0004923 UBERON:0007182 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube|FMA:18336 +http://purl.obolibrary.org/obo/UBERON_8930079 outer muscle layer of fallopian tube intramural segment The outermost longitudinal smooth muscle layer of the muscularis of the fallopian tube intramural part, which lies within the uterine wall and contributes to peristaltic contractions that propel the ovum toward the uterus. https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-intramural-segment|PMID:25866566 UBERON:0006660 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930080 outer muscle layer of fallopian tube isthmus A longitudinal smooth muscle layer that forms the outermost component of the muscular coat of the fallopian tube isthmus, arranged parallel to the long axis of the tube. https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-isthmus UBERON:0012369 UBERON:0016632 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930081 plica of fallopian tube ampulla An epithelial fold that is part of the mucosa of the fallopian tube ampulla, forming an extensive array of complex folds that increase the surface area for ciliated and secretory epithelial cells involved in oocyte transport and fertilization. https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-ampulla|PMID:34496720|PMID:33167378 UBERON:0005157 UBERON:0012648 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930082 plica of fallopian tube infundibulum An epithelial fold that is part of the uterine tube infundibulum, comprising mucosal projections within the funnel-shaped abdominal extremity of the fallopian tube. https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-infundibulum|PMID:25994820 UBERON:0005157 UBERON:0003984 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930083 plica of fallopian tube intramural segment A mucosal fold that projects into the lumen of the intramural segment of the fallopian tube, formed by the elaborately folded endosalpinx characteristic of the fallopian tube mucosa. https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-intramural-segment|PMID:16938110 UBERON:0018343 UBERON:8930050 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930084 plica of fallopian tube isthmus A mucosal fold that is part of the isthmus of the fallopian tube, formed by infolding of the mucosa to increase surface area. https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-isthmus|PMID:27875265 UBERON:0018343 UBERON:0016632 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930085 serosa of fallopian tube ampulla A serous membrane that forms the outermost layer of the ampulla of the fallopian tube, derived from the visceral peritoneum and continuous with the peritoneal covering. https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-ampulla|PMID:33772852 UBERON:0000042 UBERON:0012648 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930087 serosa of fallopian tube intramural segment A serous membrane that covers the external surface of the intramural segment of the fallopian tube, the portion of the oviduct that lies within the myometrium of the uterus. https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-intramural-segment|PMID:7004702 UBERON:0000042 UBERON:0036441 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930088 serosa of fallopian tube isthmus A serous membrane that forms the outermost layer of the isthmus of the fallopian tube, derived from the visceral peritoneum. https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-isthmus|PMID:31613440|PMID:25866566 UBERON:0000042 UBERON:0016632 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube|FMA:18306 +http://purl.obolibrary.org/obo/UBERON_8930090 vasculature of Fallopian tube ampulla A vasculature that is part of the ampulla of the fallopian tube, consisting of blood vessels that supply nutrients and oxygen to the ampullary tissue and support reproductive functions. https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-ampulla|PMID:7004702|PMID:34496720 UBERON:0002049 UBERON:0012648 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930091 vasculature of Fallopian tube fimbria A network of blood vessels that supplies the fimbria of the fallopian tube, providing vascular support to the fimbrial fringe around the ostium. https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-fimbria|PMID:25994820 UBERON:0002049 UBERON:8410010 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930092 vasculature of Fallopian tube infundibulum A vasculature that is part of the uterine tube infundibulum, consisting of the network of blood vessels supplying the funnel-shaped abdominal extremity of the fallopian tube. https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-infundibulum|PMID:25994820 UBERON:0002049 UBERON:0003984 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930093 vasculature of Fallopian tube intramural segment A vasculature that supplies blood to and drains from the intramural segment of the fallopian tube, the portion of the uterine tube that passes through the uterine wall. https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-intramural-segment|PMID:16938110 UBERON:0002049 UBERON:8930050 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930094 vasculature of Fallopian tube isthmus A vasculature that is part of the isthmus of the fallopian tube, consisting of the network of blood vessels supplying this region. https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-isthmus|PMID:32587423|PMID:27875265 UBERON:0002049 UBERON:0016632 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube +http://purl.obolibrary.org/obo/UBERON_8930095 vasculature of mesosalpinx The network of blood vessels that supply and drain the mesosalpinx, the serous mesenteric fold extending from the fallopian tube to the ovary as part of the broad ligament. https://purl.org/ccf/ASCTB-TEMP_vasculature-of-mesosalpinx|PMID:29763118|doi:10.1016/B978-0-12-801238-3.64401-X UBERON:0002049 UBERON:0012331 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Mesosalpinx +http://purl.obolibrary.org/obo/UBERON_8930096 wall of fallopian tube ampulla An anatomical wall that bounds the ampulla of the fallopian tube, comprising the serosa, muscularis, and mucosal layers that define the structure of this dilated portion of the tube. https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla|PMID:34496720|PMID:7004702 UBERON:0000060 UBERON:0012648 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Ampulla_of_uterine_tube +http://purl.obolibrary.org/obo/UBERON_8930097 wall of fallopian tube infundibulum An anatomical wall that is part of the uterine tube infundibulum, forming the structural boundary of the funnel-shaped abdominal extremity of the fallopian tube. https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum|PMID:16938110 UBERON:0000060 UBERON:0003984 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930098 wall of fallopian tube intramural segment An anatomical wall that surrounds and defines the intramural segment of the fallopian tube, consisting of mucosal, muscular, and serosal layers in the portion of the tube embedded within the myometrium. https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment|PMID:16938110 UBERON:0000060 UBERON:8930050 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930099 wall of fallopian tube isthmus An anatomical wall that is part of the isthmus of the fallopian tube, consisting of the serosa, muscular layers, and mucosa. https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus|PMID:27875265 UBERON:0000060 UBERON:0016632 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-25T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Fallopian_tube