[@octokit/auth-action] The token variable is specified more than once. Use either `with.token`, `with.GITHUB_TOKEN`, or `env.GITHUB_TOKEN`. See https://github.com/octokit/auth-action.js#createactionauth

[@octokit/auth-action] The token variable is specified more than once. Use either `with.token`, `with.GITHUB_TOKEN`, or `env.GITHUB_TOKEN`. See https://github.com/octokit/auth-action.js#createactionauth

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, catchpoint/workflow-telemetry-action@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

[spelling] possible misspelling: autofills

[spelling] possible misspelling: Autofill

[spelling] possible misspelling: autofill

[spelling] possible misspelling: auth

[spelling] possible misspelling: args

[spelling] possible misspelling: args

[spelling] possible misspelling: arg

[spelling] possible misspelling: AnnotationData

[spelling] possible misspelling: ️

[spelling] possible misspelling: ️

[lintr] Put spaces around all infix operators.

[lintr] Put a space after a comma.

[lintr] Put a space after a comma.

[lintr] Put a space between a right parenthesis and a body expression.

[lintr] There should be a space before an opening curly brace.

[lintr] Put a space after a comma.

[lintr] Place a space before left parenthesis, except in a function call.

[lintr] Remove trailing whitespace.

[lintr] Remove trailing whitespace.

[lintr] Variable and function name style should match snake_case or symbols.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, catchpoint/workflow-telemetry-action@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

dependency 'BiocVersion' is not available

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, catchpoint/workflow-telemetry-action@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

dependency ‘BiocVersion’ is not available

fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi

harfbuzz 14.2.0 is already installed and up-to-date. To reinstall 14.2.0, run: brew reinstall harfbuzz