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v1.0.12: offline-safe examples/tests, lintr & spelling steps, ubuntu 22.04 #238

v1.0.12: offline-safe examples/tests, lintr & spelling steps, ubuntu 22.04

v1.0.12: offline-safe examples/tests, lintr & spelling steps, ubuntu 22.04 #238

Triggered via pull request May 5, 2026 12:42
@HDashHDash
synchronize #154
dev2
Status Success
Total duration 9m 40s
Artifacts 1

rworkflows.yml

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Matrix: rworkflows
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26 errors, 7 warnings, and 1 notice
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windows-latest (latest)
AxiosError: Request failed with status code 403
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ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
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ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Error
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AxiosError: Request failed with status code 403
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[Workflow Telemetry] AxiosError
macOS-latest (latest)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Memory Usage (MB)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"Used","color":"#377eb899","points":[{"x":1777984945318,"y":3051.125},{"x":1777984950314,"y":3028.671875},{"x":1777984955315,"y":3014.453125},{"x":1777984960316,"y":2969.390625},{"x":1777984965317,"y":2990.625},{"x":1777984970315,"y":2887.703125},{"x":1777984975314,"y":2944.4375},{"x":1777984980314,"y":2824.96875},{"x":1777984985317,"y":2899.25},{"x":1777984990313,"y":2838.578125},{"x":1777984995313,"y":2809.328125},{"x":1777985000314,"y":2810.21875},{"x":1777985005315,"y":2526.390625},{"x":1777985010315,"y":2640.296875},{"x":1777985015315,"y":2760.84375},{"x":1777985020314,"y":2825.234375},{"x":1777985025314,"y":2914.96875},{"x":1777985030316,"y":2893.859375},{"x":1777985035315,"y":1280.734375},{"x":1777985040313,"y":1512.96875},{"x":1777985045314,"y":1633.09375},{"x":1777985050320,"y":1737.109375},{"x":1777985055314,"y":1638.390625},{"x":1777985060314,"y":2004.5625},{"x":1777985065313,"y":1993.3125},{"x":1777985070316,"y":1998.5625},{"x":1777985075313,"y":1993.796875},{"x":1777985080315,"y":2305.1875},{"x":1777985085315,"y":2572.25},{"x":1777985090316,"y":2569.546875},{"x":1777985095314,"y":2572.890625},{"x":1777985100316,"y":2578.015625},{"x":1777985105313,"y":2582.578125},{"x":1777985110313,"y":2567.8125},{"x":1777985115313,"y":2544.140625},{"x":1777985120315,"y":2556.75},{"x":1777985125313,"y":1705.171875},{"x":1777985130316,"y":1693.890625},{"x":1777985135314,"y":1700.140625},{"x":1777985140314,"y":1722.015625},{"x":1777985145312,"y":1754.234375},{"x":1777985150318,"y":1879.140625},{"x":1777985155313,"y":1953.5},{"x":1777985160313,"y":1967.921875},{"x":1777985165314,"y":2012.875},{"x":1777985170313,"y":2012.171875},{"x":1777985175314,"y":2123.078125},{"x":1777985180313,"y":2278.5},{"x":1777985185313,"y":2520.765625},{"x":1777985190314,"y":2554.328125},{"x":1777985195315,"y":2575.34375},{"x":1777985200315,"y":2605.5},{"x":1777985205314,"y":2624.296875},{"x":1777985210315,"y":2641.9375},{"x":1777985215314,"y":2652.796875},{"x":1777985220316,"y":2693.109375},{"x":1777985225315,"y":2755.078125},{"x":1777985230313,"y":2792.46875},{"x":1777985235315,"y":2758.28125},{"x":1777985240315,"y":2843.140625},{"x":1777985245312,"y":2814.265625},{"x":1777985250313,"y":2787.546875},{"x":1777985255316,"y":2847.234375},{"x":1777985260315,"y":2836.640625},{"x":1777985265315,"y":2808.078125},{"x":1777985270315,"y":2302.21875},{"x":1777985275314,"y":2364.890625},{"x":1777985280314,"y":2376.796875},{"x":1777985285314,"y":2395.671875},{"x":1777985290324,"y":2414.734375},{"x":1777985295316,"y":2411.546875},{"x":1777985300314,"y":2451.953125},{"x":1777985305316,"y":2460.140625},{"x":1777985310315,"y":2474.609375},{"x":1777985315314,"y":2508.015625},{"x":1777985320315,"y":2513.59375},{"x":1777985325316,"y":2381.8125},{"x":1777985330314,"y":2123.234375},{"x":1777985335321,"y":2217.296875},{"x":1777985340315,"y":2355.140625},{"x":1777985345316,"y":2373.40625},{"x":1777985350314,"y":2534.0625},{"x":1777985355315,"y":2435.6875},{"x":1777985360314,"y":2674.171875},{"x":1777985365316,"y":2776.21875},{"x":1777985370314,"y":2785.609375},{"x":1777985375316,"y":2822.84375},{"x":1777985380315,"y":2846.234375},{"x":1777985385316,"y":2670.46875},{"x":1777985390314,"y":2716.78125},{"x":1777985395314,"y":2787.421875},{"x":1777985400322,"y":2803.625},{"x":1777985405314,"y":2803.921875},{"x":1777985410315,"y":2769.546875},{"x":1777985415314,"y":2764.25},{"x":1777985420314,"y":2777.125},{"x":1777985425314,"y":2784.375},{"x":1777985430314,"y":2779.375},{"x":1777985435314,"y":2786.1875},{"x":1777985440314,"y":2806.328125},{"x":1777985445314,"y":2808.609375},{"x":1777985450315,"y":2781.171875},{"x":1777985455315,"y":2848.90625},{"x":1777985460314,"y":2772.421875},{"x":1777985465314,"y":2813.171875},{"x":1777985470314,"y":2741.046875},{"x":1777985475315,"y":2804.671875},{"x":1777985480316,"y":2792.359375},{"x":1777985485314,"y":2832.921875},{"x":1777985490317,"y":2571.578125},{
macOS-latest (latest)
AxiosError: Request failed with status code 403
macOS-latest (latest)
[Workflow Telemetry] AxiosError
macOS-latest (latest)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"CPU Load (%)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"User Load","color":"#e41a1c99","points":[{"x":1777984945318,"y":42.36767064694351},{"x":1777984950314,"y":36.351441985244804},{"x":1777984955315,"y":34.56128600133959},{"x":1777984960316,"y":39.3716577540107},{"x":1777984965317,"y":38.168449197860966},{"x":1777984970315,"y":35.5525965379494},{"x":1777984975314,"y":28.759028233749177},{"x":1777984980314,"y":42.71047227926078},{"x":1777984985317,"y":32.53173012692051},{"x":1777984990313,"y":37.12574850299401},{"x":1777984995313,"y":38.575268817204304},{"x":1777985000314,"y":33.75499334221039},{"x":1777985005315,"y":27.71485676215856},{"x":1777985010315,"y":22.16252518468771},{"x":1777985015315,"y":22.021419009370817},{"x":1777985020314,"y":29.279576999339064},{"x":1777985025314,"y":38.213566151779716},{"x":1777985030316,"y":38.358905937291524},{"x":1777985035315,"y":36.99731903485255},{"x":1777985040313,"y":16.25418060200669},{"x":1777985045314,"y":27.333333333333332},{"x":1777985050320,"y":29.86666666666667},{"x":1777985055314,"y":20.460704607046072},{"x":1777985060314,"y":21.872909698996658},{"x":1777985065313,"y":21.017845340383346},{"x":1777985070316,"y":22.56548018804567},{"x":1777985075313,"y":26.51006711409396},{"x":1777985080315,"y":19.920053297801466},{"x":1777985085315,"y":16.823056300268096},{"x":1777985090316,"y":12.35804943219773},{"x":1777985095314,"y":15.363881401617252},{"x":1777985100316,"y":12.51673360107095},{"x":1777985105313,"y":16.241610738255034},{"x":1777985110313,"y":15.82109479305741},{"x":1777985115313,"y":16.46505376344086},{"x":1777985120315,"y":17.65489673550966},{"x":1777985125313,"y":13.615023474178404},{"x":1777985130316,"y":26.136363636363637},{"x":1777985135314,"y":10.7981220657277},{"x":1777985140314,"y":28.02929427430093},{"x":1777985145312,"y":31.951871657754012},{"x":1777985150318,"y":43.65918097754293},{"x":1777985155313,"y":40.87542087542088},{"x":1777985160313,"y":39.906417112299465},{"x":1777985165314,"y":12.683578104138851},{"x":1777985170313,"y":26.969292389853138},{"x":1777985175314,"y":43.72496662216289},{"x":1777985180313,"y":46.72459893048128},{"x":1777985185313,"y":37.391304347826086},{"x":1777985190314,"y":17.236753856472166},{"x":1777985195315,"y":11.214953271028037},{"x":1777985200315,"y":14.304993252361673},{"x":1777985205314,"y":9.115281501340483},{"x":1777985210315,"y":9.463087248322148},{"x":1777985215314,"y":10.37483266398929},{"x":1777985220316,"y":13.212608987256875},{"x":1777985225315,"y":15.461847389558233},{"x":1777985230313,"y":12.416555407209612},{"x":1777985235315,"y":14.630872483221477},{"x":1777985240315,"y":11.879194630872483},{"x":1777985245312,"y":10.999329309188465},{"x":1777985250313,"y":9.986595174262733},{"x":1777985255316,"y":14.919354838709678},{"x":1777985260315,"y":10.74766355140187},{"x":1777985265315,"y":19.918973666441595},{"x":1777985270315,"y":10.726182544970019},{"x":1777985275314,"y":28.000000000000004},{"x":1777985280314,"y":12.940379403794038},{"x":1777985285314,"y":12.040133779264215},{"x":1777985290324,"y":13.075383589059372},{"x":1777985295316,"y":9.919028340080972},{"x":1777985300314,"y":11.409395973154362},{"x":1777985305316,"y":11.705685618729097},{"x":1777985310315,"y":14.949494949494948},{"x":1777985315314,"y":11.066398390342053},{"x":1777985320315,"y":11.282740094022834},{"x":1777985325316,"y":11.438127090301004},{"x":1777985330314,"y":26.00267379679144},{"x":1777985335321,"y":31},{"x":1777985340315,"y":27.102803738317753},{"x":1777985345316,"y":28.475486903962388},{"x":1777985350314,"y":32.796780684104625},{"x":1777985355315,"y":53.497668221185876},{"x":1777985360314,"y":55.190890823844605},{"x":1777985365316,"y":35.188866799204774},{"x":1777985370314,"y":63.47184986595175},{"x":1777985375316,"y":55.6970509383378},{"x":1777985380315,"y":46.9061876247505},{"x":1777985385316,"y":55.74750830564784},{"x":1777985390314,"y":74.74815312290127},{"x":1777985395314,"y":71.45708582834331},{"x":177798540032
macOS-latest (latest)
AxiosError: Request failed with status code 403
macOS-latest (latest)
[Workflow Telemetry] AxiosError
windows-latest (latest)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, catchpoint/workflow-telemetry-action@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
windows-latest (latest)
dependency 'BiocVersion' is not available
ubuntu-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, catchpoint/workflow-telemetry-action@v2, docker/build-push-action@v6, docker/login-action@v3, docker/setup-buildx-action@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (latest)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, catchpoint/workflow-telemetry-action@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (latest)
dependency β€˜BiocVersion’ is not available
macOS-latest (latest)
fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi
macOS-latest (latest)
harfbuzz 14.2.0 is already installed and up-to-date. To reinstall 14.2.0, run: brew reinstall harfbuzz
windows-latest (latest)
NOTICE: windows-2025 requests are being redirected to windows-2025-vs2026 by May 12, 2026

Artifacts

Produced during runtime
Name Size Digest
neurogenomics~rworkflows~RAAXYR.dockerbuild Expired
74.1 KB
sha256:3f7fd9c5ea69af9aa5e9ca8434fff5a88888b112e844f06453d1452dd5def1fd