nf-cascade/nf-cascade-params.yml at main · mahesh-panchal/nf-cascade · GitHub

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# workflows: 'demo'
# workflows: 'fetchngs'
# workflows: 'fetchngs,rnaseq'
workflows: 'fetchngs,taxprofiler,mag,funcscan'
general:
  wf_opts: '-resume -ansi-log false'
# demo:
#   wf_opts: '-profile docker,test'
#   add_config: 'configs/multiqc.config'
fetchngs:
  params_file: 'tests/data/fetchngs_taxprofiler_params.yml'
  input: 'tests/data/fetchngs_taxprofiler_samplesheet.csv'
  wf_opts: '-profile docker,test -r 1.12.0'
  # add_config: 'configs/multiqc.config'
# rnaseq:
#   wf_opts: '-profile docker,test -r 3.18.0'
#   add_config: 'configs/multiqc.config'
taxprofiler:
  wf_opts: '-profile docker,test -r 1.2.6'
  # add_config: 'configs/multiqc.config'
mag:
  params_file: 'tests/data/mag_params.yml'
  wf_opts: '-profile docker,test -r 5.4.0'
  # add_config: 'configs/multiqc.config'
funcscan:
  params_file: 'tests/data/funcscan_params.yml'
  wf_opts: '-profile docker,test -r 3.0.0'
  add_config: 'configs/multiqc.config'