diff --git a/less/components/enrichment.less b/less/components/enrichment.less index daad8a7ee..1c7928474 100644 --- a/less/components/enrichment.less +++ b/less/components/enrichment.less @@ -174,6 +174,10 @@ div.value {} } + + .col-xs-2 { + white-space: nowrap; + } } .popover-content { diff --git a/less/components/icons.less b/less/components/icons.less index 46f7d92e3..6fdb540d1 100644 --- a/less/components/icons.less +++ b/less/components/icons.less @@ -16,3 +16,15 @@ .icon-2x { .icon(2em) } + + +#icons { + position: absolute; + width: 0; + height: 0; +} + + +.icon.icon-globe { + fill: #939393; +} \ No newline at end of file diff --git a/less/components/querybuilder.less b/less/components/querybuilder.less index 6f3092312..ed99fd7e1 100644 --- a/less/components/querybuilder.less +++ b/less/components/querybuilder.less @@ -281,6 +281,7 @@ div.column-container { } .model-browser { + .icon { fill: darken(silver,10%); } @@ -308,6 +309,7 @@ div.column-container { // padding-left: 0.2em; border: 1px solid #d5d5d5; border-width: 0 0 1px 1px; + white-space: nowrap; &.haschildren { border-bottom: 0; @@ -395,6 +397,7 @@ div.column-container { .qb-label { padding-left: 0; white-space: nowrap; + margin-left: 5px; } .icon-blank::before, @@ -549,6 +552,7 @@ div.column-container { background-color: #c8ced0; color: #666; border-radius: 3px; + margin-left: 5px; } .label-no-results { diff --git a/less/components/regions.less b/less/components/regions.less index 7ceccb1ff..e6a9deeac 100644 --- a/less/components/regions.less +++ b/less/components/regions.less @@ -118,6 +118,11 @@ .allresults { display: flex; flex-direction: column; + + .feature { + overflow-wrap: break-word; + } + } .results { diff --git a/less/im-tables-overrides.less b/less/im-tables-overrides.less index 5e90b0228..479246e0c 100644 --- a/less/im-tables-overrides.less +++ b/less/im-tables-overrides.less @@ -93,9 +93,9 @@ min-height: 2em; } - .im-table-toolbar label { - .dark-text; - } + .im-table-toolbar label { + .dark-text; + } } .results-and-enrichment { diff --git a/less/overrides.less b/less/overrides.less index 0e711ac11..31418e851 100644 --- a/less/overrides.less +++ b/less/overrides.less @@ -140,3 +140,8 @@ input.form-control:focus { label { color: @body-foreground-color; } + +.col-xs-3 { + font-size: 0.8em; +} + diff --git a/less/site.less b/less/site.less index 66bd53488..175bbb473 100644 --- a/less/site.less +++ b/less/site.less @@ -293,6 +293,7 @@ label { margin-right: 0; } + .loading { display: flex; justify-content: center; @@ -353,6 +354,11 @@ button.btn, button.cta { } } +.btn.btn-raised.dropdown-toggle { + text-transform: none; + white-space: normal; +} + .dropdown-mixed-content { //mixin used for list / lookup/ = / > / < lookup dropdown //(probably other places too) @@ -399,13 +405,30 @@ button.btn, button.cta { } } +.container-fluid.results { + width: 100%; +} +.icon.icon-document-list { + margin-left: 0px; +} + +.relative.im-table { + background-color: white; +} .no-gutter { margin-right: 0; margin-left: 0; } +.description-div { + background-color: #D2CEBF; + padding: 10px; + overflow: auto; +} + + .no-gutter > [class*="col-"] { padding-right: 5px; padding-left: 5px; diff --git a/less/variables.less b/less/variables.less index 60e0a552d..f90d9ce5f 100644 --- a/less/variables.less +++ b/less/variables.less @@ -43,6 +43,7 @@ .icon { color: @cta-color-text; fill: @cta-color-text; + position: absolute; } } diff --git a/src/cljs/bluegenes/components/icons.cljs b/src/cljs/bluegenes/components/icons.cljs index 2eccd4733..359e0cbeb 100644 --- a/src/cljs/bluegenes/components/icons.cljs +++ b/src/cljs/bluegenes/components/icons.cljs @@ -15,11 +15,11 @@ ;; of bluegenes and copy/paste the code for your icon from there (defn icons [] - [:svg + [:svg#icons {:version "1.1" :height "0" - :width "0" - :style {:position "absolute" :width 0 :height 0}} + :width "0"} + [:defs [:symbol#icon-intermine @@ -418,8 +418,7 @@ [:path.path4 {:d "M11.5 9h-7c-0.276 0-0.5-0.224-0.5-0.5s0.224-0.5 0.5-0.5h7c0.276 0 0.5 0.224 0.5 0.5s-0.224 0.5-0.5 0.5z"}]] [:svg#icon-rat - {:style {:enable-background "new 0 0 493.008 493.008"} - :view-box "0 0 493.008 493.008" + {:view-box "0 0 493.008 493.008" :version "1.1"} [:title "rat"] [:path @@ -453,8 +452,7 @@ "M585.831,10.021c-1.281-0.314-2.566-0.359-3.77-0.359l-1.51,0.008l-0.723-0.008c-0.392,0-0.791,0.065-1.555,0.208 c-1.027-0.078-2.052-0.18-3.08-0.281c-1.652-0.167-3.309-0.335-4.961-0.408c-3.081-0.123-6.182-0.225-9.245,0.028 c-1.551,0.127-2.995,0.551-4.395,0.963c-0.648,0.192-1.298,0.384-1.954,0.539c-1.021,0.241-2.044,0.465-3.068,0.69 c-1.444,0.318-2.889,0.636-4.32,0.995c-1.429,0.355-2.84,0.759-4.256,1.159l-5.365,1.453c-2.411,0.628-4.826,1.261-7.201,2.016 c-1.232,0.396-2.317,0.975-3.37,1.542c-0.579,0.31-1.154,0.62-1.75,0.89c-1.028,0.461-2.069,0.894-3.113,1.326 c-1.652,0.685-3.305,1.371-4.904,2.162c-1.832,0.902-3.603,1.926-5.373,2.946l-3.072,1.754c-0.584,0.334-1.163,0.673-1.775,0.935 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l0.057,0.767c0.086,1.061,0.971,1.876,2.036,1.876h10.498c-0.424,0.69-1.13,1.13-2.109,1.322c-1.86,0.363-3.717,0.763-5.573,1.159 l-2.256,0.481c-1.069,0.229-1.771,1.256-1.591,2.33l0.122,0.734c0.171,0.975,1.02,1.689,2.012,1.689h3.439l-22.693,30.212 c-0.621-0.159-1.224-0.322-1.816-0.481c-2.24-0.6-4.357-1.171-6.54-1.518c-2.334-0.379-4.684-0.42-6.96-0.457l-1.297-0.024 c-8.797-0.196-15.276-3.5-20.392-10.408c-7.511-10.13-15.969-20.718-25.859-32.367c-3.476-4.088-7.295-7.948-10.992-11.685 c-2.656-2.685-5.316-5.373-7.866-8.16c-6.079-6.643-13.709-11.008-22.668-12.983c-2.097-0.461-4.194-0.938-6.292-1.416 c-5.263-1.2-10.71-2.436-16.124-3.436C20.93,142.798,11.803,135.85,7.164,124.165z"}]] [:svg#icon-human - {:style {:enable-background "new 0 0 206 206.326"} - :view-box "0 0 206.326 206.326" + {:view-box "0 0 206.326 206.326" :version "1.1"} [:title "human"] [:path diff --git a/src/cljs/bluegenes/components/ui/alerts.cljs b/src/cljs/bluegenes/components/ui/alerts.cljs index 0cc15fc48..bcced17b6 100644 --- a/src/cljs/bluegenes/components/ui/alerts.cljs +++ b/src/cljs/bluegenes/components/ui/alerts.cljs @@ -38,8 +38,7 @@ [:span.markup markup] [:span.controls [:button.btn.btn-default.btn-xs.btn-raised - {:on-click (fn [] (dispatch [:messages/remove id])) - :style {:margin 0}} "X"]]])})) + {:on-click (fn [] (dispatch [:messages/remove id]))} "X"]]])})) (defn messages "Creates a message bar on the bottom of the screen" diff --git a/src/cljs/bluegenes/components/ui/constraint.cljs b/src/cljs/bluegenes/components/ui/constraint.cljs index 323788e2f..e27580750 100644 --- a/src/cljs/bluegenes/components/ui/constraint.cljs +++ b/src/cljs/bluegenes/components/ui/constraint.cljs @@ -253,7 +253,6 @@ ((or on-change-operator on-change) {:code code :path path :value (cond-> value (seq? value) first) :op op})))]] [:div.col-sm-8 [:div - {:style {:position "relative"}} [constraint-text-input :model model :value value @@ -276,8 +275,7 @@ ((or on-blur on-change) {:path path :value val :op op :code code})))] (when on-remove [:svg.icon.icon-bin - {:style {:position "absolute"} - :on-click (fn [op] (on-remove {:path path :value value :op op}))} + {:on-click (fn [op] (on-remove {:path path :value value :op op}))} [:use {:xlinkHref "#icon-bin"}]])]]]] #_[:div.constraint-component [:div.input-group.constraint-input diff --git a/src/cljs/bluegenes/components/ui/list_dropdown.cljs b/src/cljs/bluegenes/components/ui/list_dropdown.cljs index c2375ad34..8536a133c 100644 --- a/src/cljs/bluegenes/components/ui/list_dropdown.cljs +++ b/src/cljs/bluegenes/components/ui/list_dropdown.cljs @@ -49,10 +49,8 @@ filter-fn (apply every-pred [text-filter type-filter]) filtered-lists (filter filter-fn lists)] [:div.dropdown - [:button.btn.btn-raised.btn-default.dropdown-toggle + [:button.btn.btn-raised.dropdown-toggle {:disabled disabled - :style {:text-transform "none" - :white-space "normal"} :data-toggle "dropdown"} (str (or value "Choose a list") " ") [:span.caret]] [:div.dropdown-menu.dropdown-mixed-content @@ -60,7 +58,7 @@ [:div.container-fluid [text-filter-form text-filter-atom] [:div.col-md-6 - [:h4 [:svg.icon.icon-history [:use {:xlinkHref "#icon-history"}]] " Recently Created"] + [:h4 [:svg.icon.icon-history [:use {:xlinkHref "#icon-history"}]] " Recently Created"] [im-lists :lists (take 5 (sort-by :timestamp filtered-lists)) :on-change on-change]] diff --git a/src/cljs/bluegenes/events/registry.cljs b/src/cljs/bluegenes/events/registry.cljs index fdf9d5f7a..08025823e 100644 --- a/src/cljs/bluegenes/events/registry.cljs +++ b/src/cljs/bluegenes/events/registry.cljs @@ -46,8 +46,7 @@ (not (contains? registry current-mine)) {:db (assoc db-with-registry :current-mine :default) :dispatch [:messages/add - {:markup [:span (str "Your mine has been changed to the default as your selected mine '" (name current-mine) "' was not present in the registry.")] - :style "warning"}]} + {:markup [:span (str "Your mine has been changed to the default as your selected mine '" (name current-mine) "' was not present in the registry.")]}]} ;; Fill in the mine details if it's missing. ;; (This happens when we use a registry mine.) (nil? (get-in db-with-registry [:mines current-mine])) diff --git a/src/cljs/bluegenes/pages/mymine/views/mymine.cljs b/src/cljs/bluegenes/pages/mymine/views/mymine.cljs index c6a0ca18d..0d877daae 100644 --- a/src/cljs/bluegenes/pages/mymine/views/mymine.cljs +++ b/src/cljs/bluegenes/pages/mymine/views/mymine.cljs @@ -125,7 +125,7 @@ (defn ico [] (fn [file-type] (case file-type - "list" [:svg.icon.icon-document-list {:style {:margin-left 0}} + "list" [:svg.icon.icon-document-list [:use {:xlinkHref "#icon-document-list"}]] "tag" [:svg.icon.icon-folder [:use {:xlinkHref "#icon-folder"}]] [:svg.icon.icon-folder [:use {:xlinkHref "#icon-spyglass"}]]))) @@ -146,7 +146,8 @@ [:a {:href (route/href ::route/list {:title (:title dets)})} name] (when-not authorized - [:svg.icon.icon-globe {:style {:fill "#939393"}} [:use {:xlinkHref "#icon-globe"}]])] + [:svg.icon.icon-globe + [:use {:xlinkHref "#icon-globe"}]])] [:div.description-text description]] [:div.col-1 {:class (str "tag-type type-" type)} type] diff --git a/src/cljs/bluegenes/pages/querybuilder/views.cljs b/src/cljs/bluegenes/pages/querybuilder/views.cljs index 1a92c8e65..59e854e46 100644 --- a/src/cljs/bluegenes/pages/querybuilder/views.cljs +++ b/src/cljs/bluegenes/pages/querybuilder/views.cljs @@ -129,12 +129,10 @@ [:div.model-browser (let [path [root-class]] (into [:ul - [:li [:div - {:style {:white-space "nowrap"}} - [:button.btn.btn-default.btn-slim - {:on-click (fn [] (dispatch [:qb/enhance-query-add-summary-views [root-class]]))} - [:span.label-button - "Summary"]] + [:li [:div [:button.btn.btn-default.btn-slim + {:on-click (fn [] (dispatch [:qb/enhance-query-add-summary-views [root-class]]))} + [:span.label-button + "Summary"]] [:button.btn.btn-default.btn-slim {:on-click (fn [] (dispatch [:qb/expand-all]))} "Expand to Selection"] @@ -155,7 +153,7 @@ [:li.tree.haschildren [:div.flexmex [:span.lab {:class (if (im-path/class? model (join "." path)) "qb-class" "qb-attribute")} - [:span.qb-label {:style {:margin-left 5}} [tooltip {:on-click #(dispatch [:qb/expand-path path]) :title (str "Show " (uncamel k) " in the model browser")} [:a (uncamel k)]]] + [:span.qb-label [tooltip {:on-click #(dispatch [:qb/expand-path path]) :title (str "Show " (uncamel k) " in the model browser")} [:a (uncamel k)]]] (when-let [s (:subclass properties)] [:span.label.label-default (uncamel s)]) [:svg.icon.icon-bin {:on-click (if (> (count path) 1) @@ -166,8 +164,7 @@ [:svg.icon.icon-filter {:on-click (fn [] (dispatch [:qb/enhance-query-add-constraint path]))} [:use {:xlinkHref "#icon-filter"}]] (when-let [c (:id-count properties)] [:span.label.label-soft - {:class (when (= 0 c) "label-no-results") - :style {:margin-left 5}} (str c " row" (when (not= c 1) "s"))])]] + {:class (when (= 0 c) "label-no-results")} (str c " row" (when (not= c 1) "s"))])]] (when-let [constraints (:constraints properties)] (into [:ul.tree.banana] (map-indexed (fn [idx con] diff --git a/src/cljs/bluegenes/pages/regions/results.cljs b/src/cljs/bluegenes/pages/regions/results.cljs index a77fb4588..3ed10328d 100644 --- a/src/cljs/bluegenes/pages/regions/results.cljs +++ b/src/cljs/bluegenes/pages/regions/results.cljs @@ -65,8 +65,7 @@ :type class :id objectId})} [:div.grid-3_xs-3.single-feature - [:div.col {:style {:word-wrap "break-word"}} - primaryIdentifier] + [:div.col.feature primaryIdentifier] [:div.col the-type] [:div.col (str (get-in chromosomeLocation [:locatedOn :primaryIdentifier]) diff --git a/src/cljs/bluegenes/pages/reportpage/views.cljs b/src/cljs/bluegenes/pages/reportpage/views.cljs index ca6ff03c3..af4d94951 100644 --- a/src/cljs/bluegenes/pages/reportpage/views.cljs +++ b/src/cljs/bluegenes/pages/reportpage/views.cljs @@ -24,8 +24,7 @@ [:h3 (str title (when result-count (str " (" result-count ")")))] (if (= 0 result-count) [:div "No Results"] - [:div {:style {:background-color "white"}} - [im-table/main loc]])])))}))) + [:div [im-table/main loc]])])))}))) (defn strip-class [s] (clojure.string/join "." (drop 1 (clojure.string/split s ".")))) diff --git a/src/cljs/bluegenes/pages/results/enrichment/views.cljs b/src/cljs/bluegenes/pages/results/enrichment/views.cljs index 70ab7be63..759b501fc 100644 --- a/src/cljs/bluegenes/pages/results/enrichment/views.cljs +++ b/src/cljs/bluegenes/pages/results/enrichment/views.cljs @@ -77,7 +77,8 @@ :title identifier)}]))} description]}])] - [:div.col-xs-3 [:span {:style {:font-size "0.8em"}} (.toExponential p-value 6)]]]]]))) + [:div.col-xs-3 [:span + (.toExponential p-value 6)]]]]]))) (defn has-text? "Return true if a label contains a string" @@ -94,7 +95,6 @@ [:div.container-fluid [:div.row [:div.col-xs-2 - {:style {:white-space "nowrap"}} [:input {:type "checkbox" :checked selected? diff --git a/src/cljs/bluegenes/pages/results/views.cljs b/src/cljs/bluegenes/pages/results/views.cljs index 1b6e2174f..4280611bc 100644 --- a/src/cljs/bluegenes/pages/results/views.cljs +++ b/src/cljs/bluegenes/pages/results/views.cljs @@ -64,17 +64,14 @@ (if @are-there-results? ;;show results [:div.container-fluid.results - {:style {:width "100%"}} [:div.row [:div.col-sm-2 [query-history]] [:div.col-sm-7 [:div - {:style {:background-color "white"}} [tables/main [:results :table]] (when (> (count description) 0) [:div.description-div - {:style {:background-color "#D2CEBF" :padding "10px" :overflow "auto"}} [:b "Description: "] description])] [:div