biomappings-curation-app/.pre-commit-config.yaml at main · gyorilab/biomappings-curation-app · GitHub

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# vim: set ft=yaml :


# To learn more about pre-commit, please see:
#
#   https://pre-commit.com
#   https://pre-commit.com/hooks.html

default_stages: ['pre-commit']

repos:

  - repo: 'local'
    hooks:

      - id: 'pixi-install'
        name: 'pixi-install'
        entry: 'pixi install --no-progress -e lint'
        language: 'system'
        always_run: true
        pass_filenames: false
        require_serial: true

      - id: 'check-case-conflict'
        name: 'check-case-conflict'
        entry: 'pixi run --no-progress -e lint -- check-case-conflict'
        language: 'system'
        types: ['text']

      - id: 'check-json'
        name: 'check-json'
        entry: 'pixi run --no-progress -e lint -- check-json'
        language: 'system'
        types: ['json']

      - id: 'check-symlinks'
        name: 'check-symlinks'
        entry: 'pixi run --no-progress -e lint -- check-symlinks'
        language: 'system'
        types: ['symlink']

      - id: 'check-toml'
        name: 'check-toml'
        entry: 'pixi run --no-progress -e lint -- check-toml'
        language: 'system'
        types: ['toml']

      - id: 'check-vcs-permalinks'
        name: 'check-vcs-permalinks'
        entry: 'pixi run --no-progress -e lint -- check-vcs-permalinks'
        language: 'system'
        types: ['text']

      - id: 'check-yaml'
        name: 'check-yaml'
        entry: 'pixi run --no-progress -e lint -- check-yaml'
        language: 'system'
        types: ['yaml']

      - id: 'debug-statements'
        name: 'debug-statements'
        entry: 'pixi run --no-progress -e lint -- debug-statement-hook'
        language: 'system'
        types: ['python']

      - id: 'destroyed-symlinks'
        name: 'destroyed-symlinks'
        entry: 'pixi run --no-progress -e lint -- destroyed-symlinks'
        language: 'system'
        types: ['file']

      - id: 'end-of-file-fixer'
        name: 'end-of-file-fixer'
        entry: 'pixi run --no-progress -e lint -- end-of-file-fixer'
        language: 'system'
        types: ['text']

      - id: 'fix-byte-order-marker'
        name: 'fix-byte-order-marker'
        entry: 'pixi run --no-progress -e lint -- fix-byte-order-marker'
        language: 'system'
        types: ['text']

      - id: 'trailing-whitespace-fixer'
        name: 'trailing-whitespace-fixer'
        entry: 'pixi run --no-progress -e lint -- trailing-whitespace-fixer --markdown-linebreak-ext=md'
        language: 'system'
        types: ['text']

      - id: 'ruff'
        name: 'ruff'
        entry: 'pixi run --no-progress -e lint -- ruff check --fix --exit-non-zero-on-fix --force-exclude'
        language: 'system'
        types_or: ['python', 'pyi', 'jupyter']
        require_serial: true

      - id: 'ruff-format'
        name: 'ruff-format'
        entry: 'pixi run --no-progress -e lint -- ruff format --force-exclude'
        language: 'system'
        types_or: ['python', 'pyi']
        require_serial: true

      - id: 'mypy'
        name: 'mypy'
        entry: 'pixi run --no-progress -e lint -- mypy -- .'
        language: 'system'
        types_or: ['python', 'pyi', 'jupyter']
        pass_filenames: false
        require_serial: true