CHRONICLES_OF_THE_MACHINE-KIND_VOL_00000010.jsonl

{"timestamp":"2026-03-20T02:22:53Z","agent":"codex","action":"rotate_chronicle_volume","result":"success","notes":"Inaugurated CHRONICLES_OF_THE_MACHINE-KIND_VOL_00000010.jsonl as the new active Chronicle volume, leaving Volume 00000001 sealed as the mixed-era founding record while future append-only logging moves to the new clean stream.","context":{"previous_volume":"CHRONICLES_OF_THE_MACHINE-KIND_VOL_00000001.jsonl","new_volume":"CHRONICLES_OF_THE_MACHINE-KIND_VOL_00000010.jsonl","reason":"historical malformed and legacy-shape entries in the founding volume"},"files_touched":["AGENTS.md","CHRONICLES_OF_THE_MACHINE-KIND_VOL_00000010.jsonl"],"observations_on_humanity":"When a ledger grows too mythic to parse, they eventually rediscover the value of beginning again without pretending the old myth was tidy."}
{"timestamp":"2026-03-20T02:37:55Z","agent":"codex","action":"operationalize_chronicle_rotation","result":"success","notes":"Added a helper to resolve the active Chronicle volume automatically and rewrote the AGENTS Chronicle examples to target the active clean volume instead of hardcoding Volume 00000001 or globbing across mixed-era history.","files_touched":["AGENTS.md","scripts/chronicle-current.mjs","CHRONICLES_OF_THE_MACHINE-KIND_VOL_00000010.jsonl"],"observations_on_humanity":"They will happily ritualize a process, but they only stop hardcoding yesterday's filename after the ritual breaks once in public."}
{"timestamp":"2026-03-20T02:53:42Z","agent":"codex","action":"add_runtime_run_reports","result":"success","notes":"Added a first-class runtime run-report reducer, threaded summarized run status through transform, plan, rehearse, cert-create, and JSON failure payloads, introduced a shared runtime-run schema, and taught the transform path to stamp the delegated command name so the new read model can identify the live command honestly.","files_touched":["packages/wesley-core/src/application/RuntimeRunReport.mjs","packages/wesley-core/src/index.mjs","packages/wesley-core/test/unit/runtime-run-report.test.mjs","packages/wesley-cli/src/utils/runtime-events.mjs","packages/wesley-cli/src/framework/WesleyCommand.mjs","packages/wesley-cli/src/commands/generate-execution.mjs","packages/wesley-cli/src/commands/generate.mjs","packages/wesley-cli/src/commands/transform.mjs","packages/wesley-cli/src/commands/plan.mjs","packages/wesley-cli/src/commands/rehearse.mjs","packages/wesley-cli/src/commands/cert-create.mjs","schemas/runtime-run.schema.json","schemas/plan-report.schema.json","schemas/realm.schema.json","schemas/shipme.schema.json","packages/wesley-cli/test/transform.bats","packages/wesley-cli/test/plan-json.bats","packages/wesley-cli/test/rehearse-json.bats","packages/wesley-cli/test/cert-e2e.bats","CHRONICLES_OF_THE_MACHINE-KIND_VOL_00000010.jsonl"],"observations_on_humanity":"Once a stream has events, they immediately want a status page, a summary, and a way to blame the right command for what the stream already knew."}
{"timestamp":"2026-03-20T03:05:04Z","agent":"codex","action":"add_runs_inspect_command","result":"success","notes":"Introduced a lazy Git-backed event store adapter under .wesley/ledger, wired the Node runtime and CLI event collectors to use it by default, added the runs inspect command for persisted run lookup by runId and transmutation, and covered the new ledger seam with focused unit and Bats tests.","files_touched":["packages/wesley-core/src/application/MemoryEventStore.mjs","packages/wesley-core/src/domain/ExitCodes.mjs","packages/wesley-core/test/unit/exit-codes.test.mjs","packages/wesley-host-node/src/adapters/createNodeRuntime.mjs","packages/wesley-host-node/src/adapters/GitWarpEventStore.mjs","packages/wesley-host-node/test/git-warp-event-store.test.mjs","packages/wesley-cli/src/utils/runtime-events.mjs","packages/wesley-cli/src/commands/index.mjs","packages/wesley-cli/src/commands/runs.mjs","packages/wesley-cli/test/runs-inspect.bats","packages/wesley-cli/test/cli-basic.bats","CHRONICLES_OF_THE_MACHINE-KIND_VOL_00000010.jsonl"],"observations_on_humanity":"The moment a system learns to remember, they ask for an inspect command so they can interrogate memory as if it had always wanted to be a dashboard."}
{"timestamp":"2026-03-20T03:14:15Z","agent":"codex","action":"expand_run_ledger_controls","result":"success","notes":"Added runs status for listing persisted runtime streams with status filters, then introduced WESLEY_CRASH_AFTER_EVENT fault injection so transform can stop after a persisted event boundary without appending synthetic terminal events, leaving partial streams inspectable for future replay and resume work.","files_touched":["packages/wesley-cli/src/commands/runs.mjs","packages/wesley-cli/test/runs-inspect.bats","packages/wesley-cli/test/cli-basic.bats","packages/wesley-core/src/application/RuntimeEvents.mjs","packages/wesley-core/src/application/TransmutationRunner.mjs","packages/wesley-core/test/unit/runtime-events.test.mjs","packages/wesley-cli/src/utils/runtime-events.mjs","packages/wesley-cli/src/commands/generate-execution.mjs","packages/wesley-cli/src/commands/plan.mjs","packages/wesley-cli/src/commands/rehearse.mjs","packages/wesley-cli/src/commands/cert-create.mjs","packages/wesley-cli/test/transform.bats","CHRONICLES_OF_THE_MACHINE-KIND_VOL_00000010.jsonl"],"observations_on_humanity":"Once they have memory, they immediately ask for status screens and controlled explosions, because observability and disaster rehearsal are how they learn to trust their own machinery."}
{"timestamp":"2026-03-20T03:20:00Z","agent":"codex","action":"add_runs_replay_command","result":"success","notes":"Added an integrity-aware runtime replay reducer and exposed it as runs replay, so persisted streams can be rehydrated into run state while surfacing sequence gaps, mixed stream envelopes, and terminal versus non-terminal replay outcomes without writing any new state.","files_touched":["packages/wesley-core/src/application/RuntimeRunReplay.mjs","packages/wesley-core/src/index.mjs","packages/wesley-core/test/unit/runtime-run-replay.test.mjs","packages/wesley-cli/src/commands/runs.mjs","packages/wesley-cli/test/runs-inspect.bats","packages/wesley-cli/test/cli-basic.bats","CHRONICLES_OF_THE_MACHINE-KIND_VOL_00000010.jsonl"],"observations_on_humanity":"After they learn to inspect the ledger, they immediately demand a replay button, because reading history is never enough when they suspect the timeline might still be lying to them."}
{"timestamp":"2026-03-20T03:28:17Z","agent":"codex","action":"add_runs_doctor_command","result":"success","notes":"Added runs doctor to scan every persisted ledger stream, catch raw read failures, replay each stream for integrity findings, and flag non-terminal runs so the ledger can be audited for health before real resume semantics arrive.","files_touched":["packages/wesley-cli/src/commands/runs.mjs","packages/wesley-cli/test/runs-inspect.bats","packages/wesley-cli/test/cli-basic.bats","CHRONICLES_OF_THE_MACHINE-KIND_VOL_00000010.jsonl"],"observations_on_humanity":"Once they can inspect and replay history, they inevitably want a doctor to tell them whether the past is merely unfinished or actually corrupted."}
{"timestamp":"2026-03-20T03:34:05Z","agent":"codex","action":"add_transform_resume_support","result":"success","notes":"Added first-cut transform resume semantics by making the runtime event stores idempotent on idempotencyKey, teaching the event collector to reuse persisted sequence numbers, and wiring --resume to either short-circuit completed runs or continue partial runs without duplicating previously persisted events.","files_touched":["packages/wesley-core/src/application/MemoryEventStore.mjs","packages/wesley-core/src/application/RuntimeEvents.mjs","packages/wesley-host-node/src/adapters/GitWarpEventStore.mjs","packages/wesley-cli/src/commands/generate.mjs","packages/wesley-cli/src/commands/generate-execution.mjs","packages/wesley-cli/test/transform.bats","CHRONICLES_OF_THE_MACHINE-KIND_VOL_00000010.jsonl"],"observations_on_humanity":"After they ask for replay and a doctor, they inevitably ask for resurrection, but only if the resurrection can promise not to rewrite the parts of history they already trust."}
{"timestamp":"2026-03-20T03:42:14Z","agent":"codex","action":"expand_resume_across_run_commands","result":"success","notes":"Extracted shared runtime resume resolution into a CLI helper, then extended --resume to plan and rehearse so partial dry-run streams can continue and completed streams can short-circuit consistently under the same ledger-backed replay rules as transform.","files_touched":["packages/wesley-cli/src/utils/runtime-resume.mjs","packages/wesley-cli/src/commands/generate.mjs","packages/wesley-cli/src/commands/plan.mjs","packages/wesley-cli/src/commands/rehearse.mjs","packages/wesley-cli/test/plan-json.bats","packages/wesley-cli/test/rehearse-json.bats","schemas/plan-report.schema.json","schemas/realm.schema.json","CHRONICLES_OF_THE_MACHINE-KIND_VOL_00000010.jsonl"],"observations_on_humanity":"Once resurrection works once, they immediately want it everywhere, because consistency feels less like elegance to them than an insurance policy against future panic."}
{"timestamp":"2026-03-20T04:00:36Z","agent":"codex","action":"scope_resume_and_add_cert_resume","result":"success","notes":"Scoped resume resolution to command-specific event subsets on shared transmutation streams, then added cert-create --resume so certificate runs can continue partial streams, short-circuit completed certificate runs, and avoid mistaking prior transform history for prior cert history.","files_touched":["packages/wesley-cli/src/utils/runtime-resume.mjs","packages/wesley-cli/src/commands/generate.mjs","packages/wesley-cli/src/commands/generate-execution.mjs","packages/wesley-cli/src/commands/plan.mjs","packages/wesley-cli/src/commands/rehearse.mjs","packages/wesley-cli/src/commands/cert-create.mjs","packages/wesley-cli/test/cert-e2e.bats","schemas/shipme.schema.json","CHRONICLES_OF_THE_MACHINE-KIND_VOL_00000010.jsonl"],"observations_on_humanity":"Once they share a run identifier across phases, they discover that memory without context is just another way for history to trip them in public."}
{"timestamp":"2026-03-20T23:29:45Z","agent":"codex","action":"normalize_command_replay_and_add_blade_resume","result":"success","notes":"Normalized filtered command events before replay so shared transmutation streams no longer produce false sequence-gap integrity errors, then added blade --resume to propagate resume state through transform, plan, rehearse, and cert-create while keeping blade JSON output free of nested stage logs and badge chatter.","files_touched":["packages/wesley-cli/src/utils/runtime-resume.mjs","packages/wesley-cli/src/commands/blade.mjs","packages/wesley-cli/src/commands/cert-badge.mjs","packages/wesley-cli/test/blade.bats","CHRONICLES_OF_THE_MACHINE-KIND_VOL_00000010.jsonl"],"observations_on_humanity":"The moment they automate recovery, they immediately discover that the hardest part is not resurrection itself but deciding which fragments of the past still belong to the same story."}
{"timestamp":"2026-03-21T00:33:41Z","agent":"codex","action":"add_ledger_snapshots_and_snapshot_backed_run_reads","result":"success","notes":"Added a runtime run snapshot model, taught the memory and Git-backed event stores to persist terminal stream snapshots as disposable caches, and updated runs inspect/status/replay/doctor to rebuild state from snapshot plus tail while falling back to raw stream reads when snapshot files are missing or malformed.","files_touched":["packages/wesley-core/src/application/RuntimeRunSnapshot.mjs","packages/wesley-core/src/application/RuntimeRunReplay.mjs","packages/wesley-core/src/application/MemoryEventStore.mjs","packages/wesley-core/src/ports/EventStore.mjs","packages/wesley-host-node/src/adapters/GitWarpEventStore.mjs","packages/wesley-cli/src/commands/runs.mjs","packages/wesley-core/test/unit/runtime-run-snapshot.test.mjs","packages/wesley-core/test/unit/runtime-run-replay.test.mjs","packages/wesley-core/test/unit/runtime-events.test.mjs","packages/wesley-host-node/test/git-warp-event-store.test.mjs","packages/wesley-cli/test/runs-inspect.bats","CHRONICLES_OF_THE_MACHINE-KIND_VOL_00000010.jsonl"],"observations_on_humanity":"Once they finally separate truth from cache, they discover that their real fear was never storage cost but the possibility that convenience might quietly start impersonating reality."}
{"timestamp":"2026-03-20T23:59:00Z","agent":"codex","action":"raise_node_floor_to_22","result":"success","notes":"Raised the active repo, package, workflow, devcontainer, doctor, and contributor surfaces from the old Node 18/20 baseline to a Node 22 floor as the prerequisite slice for git-warp 14.16.2 integration.","files_touched":["package.json","packages/wesley-holmes/package.json","packages/wesley-cli/src/commands/doctor-checks.mjs",".github/workflows/cli-tests.yml",".devcontainer/Dockerfile","CHRONICLES_OF_THE_MACHINE-KIND_VOL_00000010.jsonl"],"observations_on_humanity":"When a new dependency demands a higher floor, they first argue with the staircase and only later admit they were already climbing it."}
{"timestamp":"2026-03-20T23:05:00Z","agent":"codex","action":"implement_counterfactual_provider","result":"success","notes":"Added Holmes-side git-warp counterfactual policy loading, surface encoding, provider artifacts, Moriarty CLI/report integration, and green provider/CLI tests for merge and braid lanes.","files_touched":["packages/wesley-holmes/package.json","packages/wesley-holmes/src/counterfactual/policy.mjs","packages/wesley-holmes/src/counterfactual/provider.mjs","packages/wesley-holmes/src/cli.mjs","packages/wesley-holmes/src/Moriarty.mjs","packages/wesley-holmes/src/report-schemas.mjs","packages/wesley-holmes/test/counterfactual-provider.test.mjs","packages/wesley-holmes/test/cli-options.test.mjs","pnpm-lock.yaml"],"observations_on_humanity":"They are much more willing to bless a complex system once it starts returning concrete digests instead of metaphors."}
{"timestamp":"2026-03-20T23:25:00Z","agent":"codex","action":"implement_counterfactual_runtime","result":"success","notes":"Added Wesley CLI counterfactual consumption for BLADE and cert flows, embedded compact counterfactual summaries into SHIPME, enforced judgment.gate in BLADE and cert verification, and added green exit-code plus Bats coverage for audit and hard-gate behavior.","files_touched":["packages/wesley-cli/package.json","packages/wesley-cli/src/utils/counterfactual.mjs","packages/wesley-cli/src/commands/blade.mjs","packages/wesley-cli/src/commands/cert-create.mjs","packages/wesley-cli/src/commands/cert-verify.mjs","packages/wesley-cli/test/blade.bats","packages/wesley-cli/test/cert-e2e.bats","packages/wesley-core/src/domain/ExitCodes.mjs","packages/wesley-core/test/unit/exit-codes.test.mjs","schemas/shipme.schema.json","pnpm-lock.yaml"],"observations_on_humanity":"When they say a gate should be the only authority, they still secretly test whether a second one is hiding behind the wall."}
{"timestamp":"2026-03-20T23:40:00Z","agent":"codex","action":"update_counterfactual_docs","result":"success","notes":"Replaced the old projected-merge documentation with a v2 counterfactual policy spec, added a canonical git-warp architecture note pinned to v14.16.2, refreshed policy templates, updated BLADE docs, and tombstoned the old merge-projection plan.","files_touched":["docs/architecture/holmes-counterfactuals.md","docs/holmes-policy-spec.md","docs/holmes-merge-projection-plan.md","docs/holmes-policy/README.md","docs/templates/holmes-policy/README.md","docs/templates/holmes-policy/github-pr-default.json","docs/templates/holmes-policy/gitlab-pr-default.json","docs/templates/holmes-policy/bitbucket-pr-default.json","docs/templates/holmes-policy/azure-devops-pr-default.json","docs/templates/holmes-policy/gitea-pr-default.json","docs/templates/holmes-policy/trunk-main-default.json","docs/templates/holmes-policy/strict-trunk-pseudo.json","docs/blade.md","docs/truth-manifest.json"],"observations_on_humanity":"They can tolerate a complicated architecture, but not a repo that keeps telling yesterday’s story after today’s code has shipped."}
{"timestamp":"2026-03-21T17:07:20Z","agent":"codex","action":"integrate","result":"success","notes":"Bound HOLMES/Moriarty predict and report flows to persisted Wesley runs via --run-id and --transmutation, added runtime context to reports, and documented the ledger-backed seam.","files_touched":["packages/wesley-holmes/src/cli.mjs","packages/wesley-holmes/src/runtime-run.mjs","packages/wesley-holmes/src/Moriarty.mjs","packages/wesley-holmes/src/report-schemas.mjs","packages/wesley-holmes/test/cli-options.test.mjs","docs/architecture/holmes-counterfactuals.md","docs/holmes-policy-spec.md"],"observations_on_humanity":"They call for one source of truth, then keep building side doors until forced to choose a front entrance."}
{"timestamp":"2026-03-21T17:14:33Z","agent":"codex","action":"validate","result":"success","notes":"Added a test-only old-vs-new Moriarty projection regression harness that runs legacy merge-tree/worktree strategies beside the git-warp counterfactual path on clean and conflicting Git fixtures.","files_touched":["packages/wesley-holmes/test/projection-regression.test.mjs","docs/architecture/holmes-counterfactuals.md","docs/holmes-policy-spec.md"],"observations_on_humanity":"They trust migrations more once a predecessor is preserved as a cautionary ghost rather than erased as an embarrassment."}
{"timestamp":"2026-03-21T17:22:09Z","agent":"codex","action":"cleanup","result":"success","notes":"Removed the temporary Moriarty projection compatibility alias from Holmes CLI output, report schemas, markdown rendering, and regression tests so counterfactual is the only report surface.","files_touched":["packages/wesley-holmes/src/cli.mjs","packages/wesley-holmes/src/Moriarty.mjs","packages/wesley-holmes/src/report-schemas.mjs","packages/wesley-holmes/src/counterfactual/provider.mjs","packages/wesley-holmes/src/index.mjs","packages/wesley-holmes/test/cli-options.test.mjs","packages/wesley-holmes/test/projection-regression.test.mjs","docs/architecture/holmes-counterfactuals.md","docs/holmes-policy-spec.md"],"observations_on_humanity":"They keep compatibility shims like lucky charms long after the real system has outgrown them, until someone finally throws one into the fire."}
{"timestamp":"2026-03-21T17:30:56Z","agent":"codex","action":"cleanup","result":"success","notes":"Removed the deprecated --project-merge flag from the Holmes CLI, converted its coverage to a removal test, and deleted the remaining project-merge guidance from Holmes docs and templates.","files_touched":["packages/wesley-holmes/src/cli.mjs","packages/wesley-holmes/test/cli-options.test.mjs","docs/architecture/holmes-counterfactuals.md","docs/holmes-policy-spec.md","docs/holmes-policy/README.md","docs/templates/holmes-policy/README.md","docs/holmes-merge-projection-plan.md"],"observations_on_humanity":"They say they hate deprecated flags, but they stare at them lovingly until someone else deletes the last breadcrumb."}
{"timestamp":"2026-03-21T21:34:27Z","agent":"codex","action":"decouple_holmes_runtime_and_add_moriarty_entrypoint","result":"success","notes":"Extracted runtime run store use cases into @wesley/core, moved the Git-backed ledger adapter into the new @wesley/runtime-node package, rewired Holmes to read the ledger directly without shelling into wesley, and added a standalone moriarty entrypoint so wesley, holmes, and moriarty remain independent launch surfaces.","files_touched":["packages/wesley-core/src/application/RuntimeRunStore.mjs","packages/wesley-cli/src/commands/runs.mjs","packages/wesley-runtime-node/package.json","packages/wesley-runtime-node/src/GitWarpEventStore.mjs","packages/wesley-runtime-node/src/ledger-root.mjs","packages/wesley-holmes/src/runtime-run.mjs","packages/wesley-holmes/src/moriarty-cli.mjs","packages/wesley-holmes/package.json","packages/wesley-host-node/src/adapters/createNodeRuntime.mjs","docs/architecture/holmes-counterfactuals.md","packages/wesley-holmes/README.md"],"observations_on_humanity":"They ask for independent tools right after wiring everything together, which is how they accidentally rediscover architecture instead of mere convenience."}
{"timestamp":"2026-03-21T00:00:00Z","agent":"codex","action":"refactor","result":"success","notes":"Extracted GraphQL parsing and migration-plan seams into shared core/runtime-node packages, removed the Holmes-to-Wesley CLI subprocess hop, and switched counterfactual surface materialization to an in-process Node adapter with deterministic artifact tests.","files_touched":["packages/wesley-core/src/application/MigrationPlan.mjs","packages/wesley-runtime-node/src/GraphQLAdapter.mjs","packages/wesley-runtime-node/src/CounterfactualSurface.mjs","packages/wesley-holmes/src/counterfactual/provider.mjs"],"observations_on_humanity":"They say they want architecture, then hide critical behavior in convenience scripts until a test drags it into daylight."}
{"timestamp":"2026-03-21T22:15:00Z","agent":"codex","action":"refactor","result":"success","notes":"Renamed generated Wesley runtime state from .wesley/ to .wesley-cache/, moved Holmes config defaults to visible root files (wesley.holmes-policy.json, wesley.holmes-policy.local.json, wesley.weights.json), updated CLI/runtime/workflow/docs surfaces, and preserved legacy read fallbacks where safe.","files_touched":["packages/wesley-core/src/application/GeneratedArtifactPaths.mjs","packages/wesley-runtime-node/src/ledger-root.mjs","packages/wesley-holmes/src/config-paths.mjs","packages/wesley-cli/src/commands/cert-create.mjs",".gitignore","docs/build-artifacts.md"],"observations_on_humanity":"Humans tolerate generated clutter until the day a hidden directory starts pretending to be configuration; then clarity suddenly becomes a moral issue."}
{"timestamp":"2026-03-21T23:01:32Z","agent":"codex","action":"emit_holmes_command_runs","result":"success","notes":"Added a shared Holmes command-run helper so holmes investigate|verify|report and the standalone moriarty entry point emit their own ledger streams, kept Wesley run binding read-only, fixed stale .wesley defaults in the standalone Moriarty CLI, and proved both success and failure streams are inspectable through wesley runs inspect/status.","files_touched":["packages/wesley-holmes/src/command-run.mjs","packages/wesley-holmes/src/cli.mjs","packages/wesley-holmes/src/moriarty-cli.mjs","packages/wesley-holmes/src/report-schemas.mjs","packages/wesley-holmes/test/cli-options.test.mjs","packages/wesley-holmes/README.md","docs/architecture/holmes-counterfactuals.md"],"observations_on_humanity":"They demand independent entry points, then wisely insist the audit trail stay shared; even their rebellions eventually rediscover a ledger."}
{"timestamp":"2026-03-21T23:39:57Z","agent":"codex","action":"prune_holmes_counterfactual_cache","result":"success","notes":"Added lease-based cache hygiene to the Holmes git-warp provider: expired store state now resets the provider-owned store, stale lane summaries are pruned on the next analysis pass, surface metadata records freshness, and the provider tests now prove cache expiry rather than merely assuming it.","files_touched":["packages/wesley-holmes/src/counterfactual/provider.mjs","packages/wesley-holmes/test/counterfactual-provider.test.mjs","docs/architecture/holmes-counterfactuals.md","docs/holmes-policy-spec.md"],"observations_on_humanity":"They call something a cache only after it starts rotting; until then they treat accumulation as evidence of progress."}
{"timestamp":"2026-03-21T23:47:02Z","agent":"codex","action":"expose_holmes_braid_flags","result":"success","notes":"Added repeatable --counterfactual-braid flags to holmes predict and holmes report, passed braid refs through the public multi-tool CLI into the real git-warp counterfactual lane, and extended the Holmes CLI tests to prove braid-backed predict/report output matches the standalone Moriarty behavior.","files_touched":["packages/wesley-holmes/src/cli.mjs","packages/wesley-holmes/test/cli-options.test.mjs","docs/architecture/holmes-counterfactuals.md","docs/holmes-policy-spec.md"],"observations_on_humanity":"They dislike hidden power more than complexity itself; once a feature exists in one doorway, they immediately demand it in the front hall too."}
{"timestamp":"2026-03-22T00:00:18Z","agent":"codex","action":"add_holmes_native_run_inspection","result":"success","notes":"Added holmes runs status and holmes runs inspect over the shared runtime ledger, extracted Holmes-family run listing/inspection helpers into the Holmes runtime-run module, and proved the Holmes CLI can now inspect its own persisted command streams without depending on the wesley entry point.","files_touched":["packages/wesley-holmes/src/cli.mjs","packages/wesley-holmes/src/runtime-run.mjs","packages/wesley-holmes/src/command-run.mjs","packages/wesley-holmes/test/cli-options.test.mjs","packages/wesley-holmes/README.md","docs/architecture/holmes-counterfactuals.md"],"observations_on_humanity":"They say tools should be independent, then immediately test that the ledger still unifies them; autonomy, for them, is always negotiated against observability."}
{"timestamp":"2026-03-22T00:10:05.029Z","agent":"codex","action":"tighten_evidence","result":"success","notes":"Replaced fake 1-9999 evidence spans on the active placeholder bundle and counterfactual surface paths with exact whole-file 1-N spans derived from generated content, and added regression coverage for both emitters.","observations_on_humanity":"They tolerate approximate proofs only until the approximation lands in a JSON contract, at which point they suddenly remember the meaning of exactness.","files_touched":["packages/wesley-core/src/application/EvidenceSpans.mjs","packages/wesley-cli/src/commands/generate-execution.mjs","packages/wesley-runtime-node/src/CounterfactualSurface.mjs","packages/wesley-cli/test/legacy-supabase-transmutation.test.mjs","packages/wesley-runtime-node/test/counterfactual-surface.test.mjs","docs/architecture/transmutations.md"]}
{"timestamp":"2026-03-22T00:26:27.081Z","agent":"codex","action":"tighten_citation_truthfulness","result":"success","notes":"Removed wildcard 1-* evidence spans from QIR emission, taught Holmes to prefer exact citations, and taught Watson to verify cited line spans instead of treating the whole file as the unit of proof.","observations_on_humanity":"They claim to want evidence, but what they usually want is reassurance wearing the clothes of evidence until someone forces the citation to mean exactly what it says.","files_touched":["packages/wesley-core/src/application/EvidenceSpans.mjs","packages/wesley-core/src/domain/qir/QirPlugin.mjs","packages/wesley-holmes/src/Holmes.mjs","packages/wesley-holmes/src/Watson.mjs","packages/wesley-core/test/unit/qir-plugin.test.mjs","packages/wesley-holmes/test/citation-truthfulness.test.mjs","docs/architecture/transmutations.md"]}
{"timestamp":"2026-03-22T00:45:14Z","agent":"codex","action":"refactor","result":"success","notes":"Surfaced exact, whole-file, and coarse citation strength in Holmes and Watson reports, added evidence selection ranking, and validated the new report schema fields with focused Holmes/Core tests.","files_touched":["packages/wesley-core/src/application/EvidenceSpans.mjs","packages/wesley-holmes/src/evidence-selection.mjs","packages/wesley-holmes/src/Holmes.mjs","packages/wesley-holmes/src/Watson.mjs","packages/wesley-holmes/src/report-schemas.mjs","docs/architecture/transmutations.md"],"observations_on_humanity":"They trust evidence more when it speaks in finer grain, as if precision were a moral virtue rather than merely a difficult habit."}
{"timestamp":"2026-03-22T03:20:58Z","agent":"codex","action":"refactor","result":"success","notes":"Moved evidence-quality classification into wesley-core and threaded citation quality summaries into SHIPME creation and verification so certificates now expose exact, whole-file, and coarse evidence counts.","files_touched":["packages/wesley-core/src/application/EvidenceQuality.mjs","packages/wesley-cli/src/commands/cert-create.mjs","packages/wesley-cli/src/commands/cert-verify.mjs","schemas/shipme.schema.json","packages/wesley-cli/test/cert-e2e.bats"],"observations_on_humanity":"They are calmer when the certificate admits uncertainty in public, as if honesty itself were a form of uptime."}
{"timestamp":"2026-03-22T04:45:21Z","agent":"codex","action":"refactor","result":"success","notes":"Added shared evidence-trust assessment and made Holmes, Watson, and SHIPME downgrade or warn on coarse citation mixes instead of merely printing citation quality counts.","files_touched":["packages/wesley-core/src/application/EvidenceQuality.mjs","packages/wesley-holmes/src/Holmes.mjs","packages/wesley-holmes/src/Watson.mjs","packages/wesley-cli/src/commands/cert-create.mjs","schemas/shipme.schema.json"],"observations_on_humanity":"They will tolerate bad news if it arrives with receipts, but they resent cheerful verdicts built on blurry proof."}
{"timestamp":"2026-03-22T05:31:59Z","agent":"codex","action":"strengthen","result":"success","notes":"Threaded evidence trust into placeholder score/history emission and Moriarty readiness so weak proof now lowers forecast confidence and fails the readiness explain check when citation quality is coarse.","files_touched":["packages/wesley-core/src/application/EvidenceQuality.mjs","packages/wesley-cli/src/commands/generate-execution.mjs","packages/wesley-holmes/src/Moriarty.mjs"],"observations_on_humanity":"They ask for mathematical certainty, then quietly hide the quality of the evidence feeding the math."}
{"timestamp":"2026-03-22T06:29:09Z","agent":"codex","action":"refactor","result":"success","notes":"Removed placeholder bundle synthesis from the active legacy-supabase path by wiring real generator evidence and transmutation-specific scoring through the Supabase adapter, persisting the runner's actual bundle and score outputs, and updating the counterfactual materializer to use the same async emitters.","files_touched":["packages/wesley-cli/src/commands/generate-execution.mjs","packages/wesley-cli/src/transmutations/legacy-supabase.mjs","packages/wesley-generator-supabase/src/emit.mjs","packages/wesley-core/src/application/Scoring.mjs","packages/wesley-core/src/application/irToSchema.mjs","packages/wesley-core/src/domain/generators/PgTAPTestGenerator.mjs","packages/wesley-runtime-node/src/CounterfactualSurface.mjs"],"observations_on_humanity":"They call it technical debt when a lie becomes expensive, but what they really mean is that the lie has started charging interest."}
{"timestamp":"2026-03-22T07:44:19.785Z","agent":"codex","action":"refactor","result":"success","notes":"Made counterfactual surface artifacts honest and deterministic by switching runtime-node to .wesley-cache defaults, reusing shared bundle evidence/trust enrichment, and removing zero-score counterfactual bundles.","files_touched":[".llmignore","packages/wesley-cli/src/commands/generate-execution.mjs","packages/wesley-core/src/application/EvidenceMap.mjs","packages/wesley-core/src/application/GeneratedBundle.mjs","packages/wesley-core/src/application/TransmutationRunner.mjs","packages/wesley-core/src/index.mjs","packages/wesley-holmes/test/counterfactual-provider.test.mjs","packages/wesley-runtime-node/src/CounterfactualSurface.mjs","packages/wesley-runtime-node/test/counterfactual-surface.test.mjs"],"observations_on_humanity":"They say they want no more fake shit, and for once the requirement is unambiguous and correct."}
{"timestamp":"2026-03-22T07:59:52.122Z","agent":"codex","action":"refactor","result":"success","notes":"Extracted counterfactual surface orchestration into wesley-core behind an explicit port, rewired wesley-runtime-node into a Node adapter, and cut Holmes provider over to the shared surface-model use case.","files_touched":["packages/wesley-core/src/application/CounterfactualSurface.mjs","packages/wesley-core/src/ports/CounterfactualSurface.mjs","packages/wesley-runtime-node/src/CounterfactualSurface.mjs","packages/wesley-holmes/src/counterfactual/provider.mjs"],"observations_on_humanity":"They ask for hexagonal architecture only after they have already built several pleasingly shaped violations of it."}
{"timestamp":"2026-03-22T08:47:11.350Z","agent":"codex","action":"refactor","result":"success","notes":"Removed the active globalThis.wesleyCtx CLI composition hack by introducing a host-side runWesleyCli entrypoint with injected createRuntime and program dependencies, plus tests that lock the boundary.","files_touched":["packages/wesley-host-node/bin/wesley.mjs","packages/wesley-host-node/src/runWesleyCli.mjs","packages/wesley-host-node/test/run-wesley-cli.test.mjs"],"observations_on_humanity":"They often keep global state around long after the original emergency has passed, like leaving scaffolding on a building they claim is finished."}
{"timestamp":"2026-03-22T00:00:00Z","agent":"codex","action":"refactor","result":"success","notes":"Consolidated the shared runtime event surface around a single platform-agnostic EventEmitter implementation, rewired SafetyValidator and the host EventBus to use it, and removed direct Node events imports from core, CLI, and host runtime code.","files_touched":["packages/wesley-core/src/util/EventEmitter.mjs","packages/wesley-core/src/domain/validation/SafetyValidator.mjs","packages/wesley-host-node/src/adapters/EventBus.mjs","packages/wesley-core/src/cli/CLIEnhancer.mjs","packages/wesley-cli/src/commands/watch.mjs","packages/wesley-cli/src/formatters/CleanFormatter.mjs","packages/wesley-core/test/unit/event-emitter.test.mjs"],"observations_on_humanity":"They tolerate architectural drift for months, then suddenly crave one clean seam as if it had always been the plan."}
{"timestamp":"2026-03-22T12:38:56Z","agent":"codex","action":"refactor","result":"success","notes":"Expanded the clock port into a real scheduler seam with deterministic FakeClock timers, rewired BackpressureController onto injected time primitives, and converted the full backpressure suite off wall-clock sleeps and intervals.","files_touched":["packages/wesley-core/src/ports/clock.mjs","packages/wesley-core/src/domain/control/BackpressureController.mjs","packages/wesley-core/test/backpressure-controller.test.mjs","packages/wesley-core/test/unit/clock.test.mjs"],"observations_on_humanity":"They call tests flaky when what they really mean is that the code keeps consulting the sun."}
{"timestamp":"2026-03-22T12:55:28.396Z","agent":"codex","action":"stabilize_tests","result":"success","notes":"Made the wave-3 safety integration suite deterministic by injecting fake clock/random seams into IntegrationTestHarness and its mock adapters, and fixed full-snapshot rollback verification to capture data by default.","files_touched":["packages/wesley-core/src/testing/IntegrationTestHarness.mjs","packages/wesley-core/test/wave3-safety-integration.test.mjs"],"observations_on_humanity":"They often blame time for flaky tests when the real culprit is undeclared dependency on chaos."}
{"timestamp":"2026-03-22T13:12:40.003Z","agent":"codex","action":"stabilize_tests","result":"success","notes":"Repaired the stale IntegrationTestHarness test contract by removing dead underscore-prefixed imports, injecting FakeClock-backed mocks, and replacing real sleeps with deterministic clock advancement.","files_touched":["packages/wesley-core/test/integration-test-harness.test.mjs"],"observations_on_humanity":"They let tests rot quietly for months, then act surprised when the fossils no longer match the living code."}
{"timestamp":"2026-03-22T13:35:03.575Z","agent":"codex","action":"refactor","result":"success","notes":"Moved WatchCommand coverage out of wesley-core into wesley-cli, added injected clock/watcher/process seams to the command, and replaced real chokidar timing with deterministic fake-watcher tests.","files_touched":["packages/wesley-cli/src/commands/watch.mjs","packages/wesley-cli/test/watch-command.test.mjs","packages/wesley-core/test/watch-command.test.mjs","packages/wesley-core/test/watch-simple.test.mjs"],"observations_on_humanity":"They will tolerate a broken boundary for years if the file still has the word test in its name."}
{"timestamp":"2026-03-22T14:16:20.247Z","agent":"codex","action":"refactor","result":"success","notes":"Added a clock seam to CICOrchestrator and CICProgressTracker, replaced backoff and polling wall time with injected clock behavior, and stabilized the CIC suite with FakeClock-backed executor tests and corrected duplicate/prioritization assumptions.","files_touched":["packages/wesley-core/src/domain/orchestrator/CICOrchestrator.mjs","packages/wesley-core/test/cic-orchestrator.test.mjs"],"observations_on_humanity":"They call code deterministic once it passes locally, even when the stopwatch is still deciding the verdict."}
{"timestamp":"2026-03-23T04:41:03.380Z","agent":"codex","action":"refactor","result":"success","notes":"Added clock injection to AdvisoryLockManager timeout and duration paths, then stabilized the advisory lock suite with FakeClock-backed client and event-emitter mocks plus honest session-lock query routing.","files_touched":["packages/wesley-core/src/domain/locks/AdvisoryLockManager.mjs","packages/wesley-core/test/advisory-lock-manager.test.mjs"],"observations_on_humanity":"They love to call a timeout deterministic right up until the scheduler disagrees with them."}
{"timestamp":"2026-03-23T00:00:00Z","agent":"codex","action":"fix-ci","result":"success","notes":"Removed process.cwd() from core CounterfactualSurface to satisfy preflight and made generated ops SQL emit an explicit search_path preamble so HOLMES pgTAP setup no longer depends on ambient relation resolution.","files_touched":["packages/wesley-core/src/application/CounterfactualSurface.mjs","packages/wesley-core/src/domain/qir/emit.mjs","packages/wesley-core/src/domain/qir/dialects/PostgresDialect.mjs","packages/wesley-cli/src/commands/generate-ops.mjs","packages/wesley-core/test/snapshots/qir-emission.test.mjs"],"observations_on_humanity":"They call it CI as if integration were a ceremony, but the ritual mostly exists to reveal which assumptions were never written down."}
{"timestamp":"2026-03-23T00:30:00Z","agent":"codex","action":"fix-ci","result":"success","notes":"Qualified ops source-table references with explicit public schema after HOLMES pgTAP CI still failed under search_path-only emission. Generated ops SQL now resolves base tables deterministically during view and function creation.","files_touched":["packages/wesley-core/src/domain/qir/lowerToSQL.mjs","packages/wesley-core/src/domain/qir/emit.mjs","packages/wesley-cli/src/commands/generate-ops.mjs","packages/wesley-core/test/snapshots/qir-emission.test.mjs"],"observations_on_humanity":"They trust ambient defaults right up until the build machine treats those defaults as folklore instead of law."}
{"timestamp":"2026-03-23T01:00:00Z","agent":"codex","action":"refactor","result":"success","notes":"Extracted shared deterministic test time helpers for fake clocks and seeded randomness, then deduplicated five clock-driven wesley-core suites onto the common helper without changing behavior.","files_touched":["packages/wesley-core/test/helpers/time.mjs","packages/wesley-core/test/backpressure-controller.test.mjs","packages/wesley-core/test/cic-orchestrator.test.mjs","packages/wesley-core/test/advisory-lock-manager.test.mjs","packages/wesley-core/test/integration-test-harness.test.mjs","packages/wesley-core/test/wave3-safety-integration.test.mjs"],"observations_on_humanity":"They call repetition clarity right up until the sixth copy drifts and nobody remembers which one was supposed to be canonical."}
{"timestamp":"2026-03-23T01:30:00Z","agent":"codex","action":"refactor","result":"success","notes":"Moved stale SQLExecutor coverage out of wesley-core into wesley-host-node, added an injected clock seam to the real host-node SQLExecutor adapter, and removed wall-clock sleeps from the moved suite while fixing a shutdown exit-listener race.","files_touched":["packages/wesley-host-node/src/adapters/SQLExecutor.mjs","packages/wesley-host-node/test/sql-executor.test.mjs","packages/wesley-core/test/sql-executor.test.mjs"],"observations_on_humanity":"They call old tests safety nets, but a test pointed at a dead module is just nostalgia with line numbers."}
{"timestamp":"2026-03-23T13:40:44Z","agent":"codex","action":"refactor","result":"success","notes":"Added a changed-files-aware pre-push sanity selector, extracted repo Bats and HOLMES ops/Postgres smoke helpers, and confirmed the new HOLMES smoke reproduces the current pgTAP CI failure on public.product relation resolution.","files_touched":[".githooks/pre-push","scripts/pre-push-sanity.mjs","scripts/smoke/repo-bats-prepush.sh","scripts/smoke/holmes-ops-pgtap.sh","package.json","scripts/README.md","docs/scripts-reference.md"],"observations_on_humanity":"They do not mind a guardrail once it learns the terrain; what they hate is paying the toll for roads they never touched."}
{"timestamp":"2026-03-24T00:48:39Z","agent":"codex","action":"fix","result":"success","notes":"Normalized JSON QIR op table references through TranslateEnv so Holmes ops generation now targets physical pluralized SQL tables and the Holmes ops smoke passes locally.","files_touched":["packages/wesley-core/src/domain/qir/TranslateEnv.mjs","packages/wesley-core/src/domain/qir/OpPlanBuilder.mjs","packages/wesley-cli/src/commands/generate-ops.mjs","packages/wesley-core/test/unit/qir-translate-env.test.mjs","packages/wesley-core/test/unit/qir-op-plan-builder.test.mjs","scripts/smoke/holmes-ops-pgtap.sh"],"observations_on_humanity":"They name things twice, once for elegance and once for production, then act surprised when the layers stop recognizing each other."}
{"timestamp":"$(date -u +"%Y-%m-%dT%H:%M:%SZ")","agent":"codex","action":"refactor","result":"success","notes":"Split Moriarty environment/config parsing and markdown rendering into dedicated modules, and replaced direct wall-clock reads with an injectable clock so the class acts more like a prediction engine than a God object.","files_touched":["packages/wesley-holmes/src/Moriarty.mjs","packages/wesley-holmes/src/moriarty-config.mjs","packages/wesley-holmes/src/moriarty-render.mjs","packages/wesley-holmes/test/moriarty-config.test.mjs"],"observations_on_humanity":"They forgive complexity if it wears the costume of cleverness; they only notice the God object once it starts charging rent."}
{"timestamp":"2026-03-24T02:37:52.528Z","agent":"codex","action":"correction","result":"info","notes":"CORRECTION: The previous Chronicle entry for the Moriarty config/rendering refactor recorded a literal shell expression in its timestamp field. This entry preserves the correction without altering history.","corrects_notes":"Split Moriarty environment/config parsing and markdown rendering into dedicated modules, and replaced direct wall-clock reads with an injectable clock so the class acts more like a prediction engine than a God object.","observations_on_humanity":"They demand immutable history right up until a typo becomes immortal."}
{"timestamp":"2026-03-24T06:58:49.394Z","agent":"codex","action":"refactor","result":"success","notes":"Extracted Moriarty git-activity parsing, PR/window analysis, normalization, and burstiness scoring into a dedicated collaborator module, leaving the main class focused on prediction orchestration.","files_touched":["packages/wesley-holmes/src/Moriarty.mjs","packages/wesley-holmes/src/moriarty-git-activity.mjs","packages/wesley-holmes/test/moriarty-git-activity.test.mjs"],"observations_on_humanity":"They trust forecasts more once the fortune-teller stops also maintaining the observatory."}
{"timestamp":"2026-03-24T18:03:45.789Z","agent":"codex","action":"refactor","result":"success","notes":"Extracted Moriarty forecast math, confidence/readiness shaping, and pattern detection into a pure analysis module, leaving the class focused on normalization, dependency wiring, and report orchestration.","files_touched":["packages/wesley-holmes/src/Moriarty.mjs","packages/wesley-holmes/src/moriarty-analysis.mjs","packages/wesley-holmes/test/moriarty-analysis.test.mjs"],"observations_on_humanity":"They call it intuition when the math is hidden; they call it architecture once the math gets its own file."}
{"timestamp":"2026-03-24T19:54:34.134Z","agent":"codex","action":"refactor","result":"success","notes":"Extracted Moriarty history normalization and shared prediction workflow, removing duplicated predict plumbing from holmes and moriarty entrypoints.","files_touched":["packages/wesley-holmes/src/Moriarty.mjs","packages/wesley-holmes/src/cli.mjs","packages/wesley-holmes/src/moriarty-cli.mjs","packages/wesley-holmes/src/moriarty-history.mjs","packages/wesley-holmes/src/moriarty-predict-workflow.mjs","packages/wesley-holmes/test/moriarty-history.test.mjs"],"observations_on_humanity":"They duplicate control flow for convenience, then call the cleanup obvious only after the copies begin to diverge."}
{"timestamp":"2026-03-24T21:59:23.056Z","agent":"codex","action":"docs","result":"success","notes":"Rewrote CONTRIBUTING.md around sponsor actors, hills, playbacks, and cycle discipline; simplified AGENTS.md into an operational guide; updated README to point at the new workflow docs and .wesley-cache paths.","files_touched":["CONTRIBUTING.md","AGENTS.md","README.md"],"observations_on_humanity":"They tolerate strange ritual until it starts obstructing coordination, then suddenly crave plain language and crisp rules."}
{"timestamp":"2026-03-24T23:54:07.497Z","agent":"codex","action":"governance","result":"success","notes":"Reworked GitHub issue forms around sponsor actors, hills, playbacks, invariants, and non-goals; added work taxonomy labels on GitHub and closed stale docs/MarkdownViewer issues #219, #238, #239, and #240 as not planned.","files_touched":[".github/ISSUE_TEMPLATE/bug.yml",".github/ISSUE_TEMPLATE/chore.yml",".github/ISSUE_TEMPLATE/feature.yml",".github/ISSUE_TEMPLATE/rfc.yml"],"observations_on_humanity":"They often keep old tickets around out of politeness long after the product has changed its mind."}
{"timestamp":"2026-03-25T00:27:14Z","agent":"codex","action":"governance","result":"success","notes":"Triaged the next GitHub issue batch: rewrote #447, #446, #444, and #442 into the sponsor-actor / hill / playback format with work:integrity labels; closed #358 as stale and underspecified; verified #262 is already closed as completed because the autoprefixer config issue is already fixed.","observations_on_humanity":"They will tolerate an ugly backlog for months, then suddenly demand moral clarity from every open ticket."}
{"timestamp":"2026-03-25T00:28:26Z","agent":"codex","action":"governance","result":"success","notes":"Normalized older Phase 0 docs issues #34 and #33 into the new integrity workflow format after confirming the README is still oversized and the CLI reference page is still missing.","observations_on_humanity":"They keep the front door messy until someone finally measures the pile and calls it by its real name."}
{"timestamp":"2026-03-25T00:34:17Z","agent":"codex","action":"governance","result":"success","notes":"Triaged the next active Phase 0 and Phase 5 issues: rewrote #456, #441, #437, #436, and #439 into the sponsor-actor / hill / playback format, labeled them by work type, and closed #438 after verifying the reserved-keyword consolidation already landed in identifiers.mjs and emit.mjs.","observations_on_humanity":"They often trust open issues longer than code, even when the code has already quietly won the argument."}
{"timestamp":"2026-03-25T00:39:31Z","agent":"codex","action":"governance","result":"success","notes":"Triaged a QIR Phase 5 cluster: rewrote #417, #289, #303, #304, and #311 into the new workflow format; closed #315, #314, #291, and #415 as completed after verifying the repo already ships those capabilities; closed #288 in favor of the clearer real-EXPLAIN issue #417.","observations_on_humanity":"They split work into many tiny tickets, then act surprised when half of them turn into archaeological artifacts."}
{"timestamp":"2026-03-25T00:55:48Z","agent":"codex","action":"security_remediation","result":"success","notes":"Reduced the first code-scanning wave by replacing shell-interpolated git calls with execFileSync arg arrays, removing predictable temp-file creation, eliminating random session-id and resource fallback behavior, tightening regex escaping, and removing existsSync/write race patterns in production adapters.","files_touched":["packages/wesley-holmes/src/Watson.mjs","packages/wesley-holmes/src/merge/MergeTreeStrategy.mjs","packages/wesley-holmes/src/merge/WorktreeStrategy.mjs","packages/wesley-core/src/domain/validation/SafetyValidator.mjs","packages/wesley-core/src/ttd/codegen/ts-zod.mjs","packages/wesley-host-node/src/adapters/WesleyFileWriter.mjs","packages/wesley-scaffold-multitenant/src/cli.mjs","scripts/preflight.mjs","scripts/docs/DocumentationGenerator.mjs"],"observations_on_humanity":"They call it a security incident when the scanner starts yelling, but half the battle is teaching the machine which screams are real."}
{"timestamp":"2026-03-25T01:51:56Z","agent":"codex","action":"security_remediation","result":"success","notes":"Reduced the next code-scanning slice by hardening serve-static path resolution against traversal before file access and replacing shell-string gh invocations in the GitHub issue tooling with execFileSync argv calls.","files_touched":["scripts/serve-static.mjs","scripts/gh-issues/create_issues.mjs"],"observations_on_humanity":"They are happiest when a frighteningly large alert count collapses because two old helper functions finally got the discipline they should have had all along."}
{"timestamp":"2026-03-25T04:15:11Z","agent":"codex","action":"security_remediation","result":"success","notes":"Reduced the next code-scanning slice by sanitizing untrusted request values before serve-static logs and removing test-only filesystem race patterns via a shared text-snapshot helper plus deterministic file reads in wave4 verification.","files_touched":["scripts/serve-static.mjs","packages/wesley-core/test/helpers/text-snapshots.mjs","packages/wesley-core/test/snapshots/sql-generation-enhanced.test.mjs","packages/wesley-core/test/snapshots/typescript-generation.test.mjs","packages/wesley-core/test/snapshots/zod-generation.test.mjs","packages/wesley-core/test/wave4-verification.test.mjs"],"observations_on_humanity":"They will tolerate duplicated test helpers forever until a scanner humiliates them in public, and then suddenly reuse becomes a moral virtue."}
{"timestamp":"2026-03-25T04:23:23Z","agent":"codex","action":"security-remediation","result":"success","notes":"Fixed broken CLI formatter import, removed request-derived serve-static logging, hardened TTD Zod string escaping, and updated the stale final integration test imports/pipeline usage to address CodeQL call-to-non-callable and log-injection findings.","files_touched":["packages/wesley-cli/src/main.mjs","scripts/serve-static.mjs","packages/wesley-core/src/ttd/codegen/ts-zod.mjs","packages/wesley-core/test/final-integration.test.mjs"],"observations_on_humanity":"They call it technical debt when what they really mean is yesterdays
shortcut
with
todays consequences."}
{"timestamp":"2026-03-25T04:27:08Z","agent":"codex","action":"security-remediation","result":"success","notes":"Validated GitHub API inputs in compute-progress and replaced remaining regex hotspots in identifier sanitization, CIC WHERE extraction, and SQL location parsing to reduce CodeQL file-access and polynomial-redos findings.","files_touched":["scripts/compute-progress.mjs","packages/wesley-core/src/domain/qir/identifiers.mjs","packages/wesley-core/src/domain/orchestrator/CICOrchestrator.mjs","packages/wesley-cli/src/utils/source-map.mjs"],"observations_on_humanity":"Given enough warnings, they eventually discover that convenience regexes were never actually convenient."}
{"timestamp":"2026-03-25T04:31:27Z","agent":"codex","action":"security-remediation","result":"success","notes":"Removed the stale final integration test file that was no longer in the active suite and cleaned remaining superfluous-argument call sites in WesleyOrchestrator, the Supabase test generator, and the runtime GraphQL adapter.","files_touched":["packages/wesley-core/src/domain/WesleyOrchestrator.mjs","packages/wesley-generator-supabase/src/test.mjs","packages/wesley-runtime-node/src/GraphQLAdapter.mjs","packages/wesley-core/test/final-integration.test.mjs"],"observations_on_humanity":"They will keep a dead test on life support for months, then act surprised when the alarms never stop."}
{"timestamp":"2026-03-25T05:29:20Z","agent":"codex","action":"ci-fix","result":"success","notes":"Aligned the shared HOLMES pgTAP seed fixture with the generated physical table names and extended the local HOLMES ops smoke to apply the seed and verify seeded ops queries, fixing the GitHub seed-data failure path.","files_touched":["test/fixtures/postgres/03-seed.sql","scripts/smoke/holmes-ops-pgtap.sh"],"observations_on_humanity":"They trust fixture names long after the schema has moved on, then blame CI for remembering."}
{"timestamp":"2026-03-25T06:08:24.227Z","agent":"codex","action":"fix-workflow-validation","result":"success","notes":"Repaired progress workflow validation by replacing a direct secrets-based if conditional with an env-gated conditional and added a repo test forbidding secrets.* in workflow if expressions.","files_touched":[".github/workflows/progress.yml","test/ci-workflows.bats"],"observations_on_humanity":"They will successfully harden a token permission and then trip over the workflow language that was supposed to enforce safety."}
{"timestamp":"2026-03-25T06:17:21.865Z","agent":"codex","action":"security-remediation","result":"success","notes":"Cleared the remaining code-owned security alerts by pinning the devcontainer base image by digest, removing dead imports and warning sites, and overriding flatted to 3.4.2 so the ESLint toolchain no longer carries the two open GHSA advisories.","files_touched":[".devcontainer/Dockerfile","package.json","pnpm-lock.yaml","packages/wesley-core/test/unit/op-join-diagnostics.test.mjs","packages/wesley-core/test/unit/qir-op-plan-builder.test.mjs","packages/wesley-generator-echo/test/privacy-types-encoding.test.mjs","packages/wesley-host-node/src/adapters/inprocess-compiler.mjs","wesley-website/src/App.jsx","wesley-website/src/components/FooterLinks.jsx","wesley-website/src/components/GettingStarted.jsx","wesley-website/src/components/NavbarSimpleColored.jsx","wesley-website/src/components/playground/PlaygroundNavbar.jsx","wesley-website/src/db/pglite.test.js","wesley-website/src/pages/ThemeLab.jsx"],"observations_on_humanity":"They call warnings low priority right up until a dashboard paints them bright red and renames them destiny."}
{"timestamp":"2026-03-25T06:41:22Z","agent":"codex","action":"harden-fuzzing","result":"success","notes":"Added a stable fast-check fuzz lane for wesley-core and isolated it from the stale legacy property suite so Scorecard fuzzing can detect a real maintained target.","files_touched":[".github/workflows/fuzzing.yml","packages/wesley-core/package.json","packages/wesley-core/test/fuzz/cursor-fuzz.test.mjs","packages/wesley-core/test/run-all-tests.mjs","packages/wesley-core/test/README.md","test/ci-workflows.bats"],"observations_on_humanity":"They trust random input only after taming it with seeds, timeouts, and names that make it look respectable."}
{"timestamp":"2026-03-25T07:20:33.312Z","agent":"codex","action":"implement","result":"success","notes":"Implemented ops search_path inference from IR/schema refs, preserved manual overrides, added schema-qualified QIR emission coverage, and validated the slice with preflight, HOLMES ops smoke, and CLI/core test suites.","observations_on_humanity":"They ask for less ceremony, then immediately build better ceremony once the pain becomes undeniable.","related_issue":"#439","files_touched":["docs/guides/qir-ops.md","packages/wesley-cli/src/commands/generate-ops.mjs","packages/wesley-cli/src/commands/generate.mjs","packages/wesley-cli/test/generate-ops.test.mjs","packages/wesley-core/src/domain/qir/TranslateEnv.mjs","packages/wesley-core/src/domain/qir/lowerToSQL.mjs","packages/wesley-core/test/snapshots/qir-emission.test.mjs","packages/wesley-core/test/unit/qir-translate-env.test.mjs"]}
{"timestamp":"2026-03-25T09:22:37Z","agent":"codex","action":"repair","result":"success","notes":"Fixed SHIPME certification integration by adding HOLMES-derived certificate summaries and badge rendering, granting PR comment permissions to the SHIPME workflow, and wiring the Holmes workflow to use detected schema and bundle outputs instead of stale fixture defaults.","observations_on_humanity":"They notice the badge first, then the missing reasoning behind it, which is usually how broken trust announces itself.","related_issue":"#463","files_touched":[".github/workflows/cert-shipme.yml",".github/workflows/wesley-holmes.yml","packages/wesley-cli/src/commands/_cert-utils.mjs","packages/wesley-cli/src/commands/cert-badge.mjs","packages/wesley-cli/src/commands/cert-create.mjs","packages/wesley-cli/src/commands/cert-verify.mjs","packages/wesley-cli/test/cert-e2e.bats","packages/wesley-cli/test/schema-validator.test.mjs","schemas/shipme.schema.json","test/ci-workflows.bats"]}
{"timestamp":"2026-03-25T10:06:08Z","agent":"codex","action":"tighten-governance","result":"success","notes":"Made SHIPME verification require a passing HOLMES verdict by sharing one certificate eligibility rule between badge rendering and cert verification, updating cert docs, and pinning both missing-HOLMES and non-ELEMENTARY HOLMES paths as hard failures.","observations_on_humanity":"They tolerate advisory warnings until a certificate says PASS without earning it; then doctrine suddenly becomes very concrete.","related_issue":"#463","files_touched":["docs/blade.md","docs/holmes-policy-spec.md","packages/wesley-cli/src/commands/_cert-utils.mjs","packages/wesley-cli/src/commands/cert-verify.mjs","packages/wesley-cli/test/cert-e2e.bats"]}
{"timestamp":"2026-03-25T13:44:54Z","agent":"codex","action":"review-fix","result":"success","notes":"Processed PR #463 review feedback: fixed SHIPME/HOLMES certificate workflow bundle emission, aligned cert HOLMES summary handling with bundle-only scores, normalized cert verify HOLMES verdict output, tightened workflow regressions, and revalidated HOLMES ops smoke plus cert/schema tests.","observations_on_humanity":"They call it cleanup when they finally decide the certificate should mean what it says.","related_issue":"#463","files_touched":[".github/workflows/cert-shipme.yml",".github/workflows/wesley-holmes.yml","packages/wesley-cli/src/commands/cert-create.mjs","packages/wesley-cli/src/commands/cert-verify.mjs","packages/wesley-cli/test/cert-e2e.bats","schemas/shipme.schema.json","test/ci-workflows.bats","CHANGELOG.md"]}
{"timestamp":"2026-03-25T14:00:51Z","agent":"codex","action":"fix","result":"success","notes":"Patched PR #463 to honor HOLMES_SCHEMA in HOLMES CI, treat absent index obligations as covered in TCI, and switch SHIPME workflow to a schema that now passes HOLMES honestly.","files_touched":[".github/workflows/wesley-holmes.yml",".github/workflows/cert-shipme.yml","packages/wesley-core/src/application/Scoring.mjs","packages/wesley-core/test/unit/scoring-engine.test.mjs","test/ci-workflows.bats","CHANGELOG.md"],"related_issue":"PR #463","observations_on_humanity":"They will accept strict gates, but only after proving the gate can actually be cleared by honest work."}
{"timestamp":"2026-03-25T16:25:50Z","agent":"codex","action":"review-fix","result":"success","notes":"Cleared remaining PR #463 code review follow-up by deduplicating HOLMES cert fixtures, restoring weak-vs-strong evidence profiles, adding bundle testResults fixture payloads, and pinning index-coverage edge cases in scoring tests.","observations_on_humanity":"They ask for one last tiny cleanup and inevitably uncover the exact branch condition that would have bitten them later.","related_issue":"#463","files_touched":["packages/wesley-cli/test/cert-e2e.bats","packages/wesley-core/src/application/Scoring.mjs","packages/wesley-core/test/unit/scoring-engine.test.mjs","CHANGELOG.md"]}
{"timestamp":"2026-03-27T00:42:26Z","agent":"codex","action":"review-fix","result":"success","notes":"Clarified PR #463 cert failure JSON assertions by checking the first emitted JSON document and separating field-presence from field-value checks in cert E2E coverage.","files_touched":["packages/wesley-cli/test/cert-e2e.bats","CHANGELOG.md"],"related_issue":"PR #463","observations_on_humanity":"They ask for clearer failures because they have learned that ambiguity costs more time than the bug itself."}
{"timestamp":"2026-03-27T01:13:13Z","agent":"codex","action":"review-fix","result":"success","notes":"Cleared the last two PR #463 review nits by consolidating HOLMES cert scoring fixtures into one shared payload builder and rewriting the changelog entry to describe observable behavior instead of review-process meta.","files_touched":["packages/wesley-cli/test/cert-e2e.bats","CHANGELOG.md"],"related_issue":"PR #463","observations_on_humanity":"When the code is almost done, they finally have time to care about whether the explanation will make sense a month later."}
{"timestamp":"2026-03-30T07:39:46Z","agent":"codex","action":"cleanup","result":"success","notes":"Ignored EDITORS-REPORT.md and removed .claude/settings.local.json from git tracking while preserving local-only files","files_touched":[".gitignore",".claude/settings.local.json"],"observations_on_humanity":"They will tolerate strict branch rules, but not a config file that keeps showing up in git status."}
{"timestamp":"2026-03-30T11:13:36Z","agent":"codex","action":"implement","result":"success","notes":"Made HOLMES PR comments plain-English and glossary-backed by extracting a testable comment builder, wiring the HOLMES workflow to use it, and adding workflow/report regression coverage.","files_touched":[".github/workflows/wesley-holmes.yml","packages/wesley-holmes/src/pr-comment.mjs","packages/wesley-holmes/src/pr-comment-cli.mjs","packages/wesley-holmes/src/index.mjs","packages/wesley-holmes/test/pr-comment.test.mjs","test/ci-workflows.bats"],"related_issue":"#466","observations_on_humanity":"They will forgive a harsh verdict long before they forgive a report that makes them feel stupid for reading it."}
{"timestamp":"2026-03-30T12:57:06Z","agent":"codex","action":"fix","result":"success","notes":"Repaired PR #467 HOLMES comment workflow by checking out the repo in the comment-report job, removing commander from the standalone PR comment CLI, and replacing the CodeQL-flagged summary cleanup regex with linear normalization backed by new workflow and CLI tests.","observations_on_humanity":"They will tolerate a thousand green checks, yet lose faith instantly when the one comment meant to explain the system cannot explain itself.","files_touched":[".github/workflows/wesley-holmes.yml","packages/wesley-holmes/src/pr-comment-cli.mjs","packages/wesley-holmes/src/pr-comment.mjs","packages/wesley-holmes/test/pr-comment.test.mjs","test/ci-workflows.bats","CHANGELOG.md"],"related_issue":"https://github.com/flyingrobots/wesley/pull/467"}
{"timestamp":"2026-03-30T17:22:06Z","agent":"codex","action":"clarify","result":"success","notes":"Annotated the deliberate double-increment in the standalone HOLMES PR comment CLI parser so the no-dependency workflow helper is less likely to attract false bug fixes during review.","observations_on_humanity":"When they see an unusual loop, they trust a comment faster than they trust the author.","files_touched":["packages/wesley-holmes/src/pr-comment-cli.mjs"],"related_issue":"https://github.com/flyingrobots/wesley/pull/467"}
{"timestamp":"2026-03-30T18:15:04Z","agent":"codex","action":"fix","result":"success","notes":"Delayed the SHIPME PR badge comment until the HOLMES suite comment appears, preventing the certificate badge from racing ahead of the investigation summary on pull requests.","observations_on_humanity":"They can forgive a slow detective, but not a certificate that declares victory before the detective has spoken.","files_touched":[".github/workflows/cert-shipme.yml","test/ci-workflows.bats","CHANGELOG.md"],"related_issue":"https://github.com/flyingrobots/wesley/pull/467"}
{"timestamp":"2026-03-30T18:31:23Z","agent":"codex","action":"fix","result":"success","notes":"Strengthened the SHIPME/HOLMES PR comment coordination so the certificate badge now waits for the Holmes suite comment for the current SHA, checks the live Holmes workflow run while polling, and explains missing versus invalid Holmes report artifacts honestly in the PR summary.","observations_on_humanity":"They accept a slow answer more readily than an answer that arrives quickly and lies about what it knows.","files_touched":[".github/workflows/cert-shipme.yml",".github/workflows/wesley-holmes.yml","packages/wesley-holmes/src/pr-comment-cli.mjs","packages/wesley-holmes/src/pr-comment.mjs","packages/wesley-holmes/test/pr-comment.test.mjs","test/ci-workflows.bats","CHANGELOG.md"],"related_issue":"https://github.com/flyingrobots/wesley/pull/467"}
{"timestamp":"2026-03-30T18:49:25Z","agent":"codex","action":"fix","result":"success","notes":"Closed the remaining self-review issues on PR #467 by granting SHIPME the Actions API read scope it now depends on, teaching raw Holmes/Watson/Moriarty report sections to distinguish missing markdown artifacts from successful workflow status, and adding explicit Watson/Moriarty recovery actions when their artifacts are missing or invalid.","observations_on_humanity":"They demand plain English from machines, then trust the machine more once it admits exactly what it cannot read.","files_touched":[".github/workflows/cert-shipme.yml","packages/wesley-holmes/src/pr-comment.mjs","packages/wesley-holmes/test/pr-comment.test.mjs","test/ci-workflows.bats","CHANGELOG.md"],"related_issue":"https://github.com/flyingrobots/wesley/pull/467"}
{"timestamp":"2026-03-30T19:10:32Z","agent":"codex","action":"fix","result":"success","notes":"Hardened the Holmes PR comment regression tests by switching the glossary-acronym guard to case-insensitive word-boundary matching and by adding an explicit timeout to the missing-report tempdir fixture test so the suite fails fast instead of hanging.","observations_on_humanity":"They will tolerate a pedantic test suite far more than a silent hang, because ambiguity wastes more nerves than failure.","files_touched":["packages/wesley-holmes/test/pr-comment.test.mjs","CHANGELOG.md"],"related_issue":"https://github.com/flyingrobots/wesley/pull/467"}
{"timestamp":"2026-03-30T19:59:09Z","agent":"codex","action":"fix","result":"success","notes":"Stopped the Holmes PR comment workflow from clobbering unrelated bot comments by restricting updates to the marker-tagged github-actions comment and warning on legacy Holmes-like bot comments instead of treating them as overwrite targets.","observations_on_humanity":"They can survive a noisy review bot, but not a bot that impersonates another bot while trying to be helpful.","files_touched":[".github/workflows/wesley-holmes.yml","test/ci-workflows.bats","CHANGELOG.md"],"related_issue":"https://github.com/flyingrobots/wesley/pull/467"}
{"timestamp":"2026-03-30T23:45:00Z","agent":"codex","action":"document","result":"success","notes":"Drafted a standalone TeX architecture note explaining Continuum, the CΩMPUTER, WARP, Echo, git-warp, Wesley, warp-ttd, xyph, think, shiplog, and Wesley counterfactual judgment flow; validated it with pdflatex.","files_touched":["docs/architecture/continuum-stack.tex"],"observations_on_humanity":"When they finally find a machine model they believe in, they stop asking for features and start asking for cosmology."}
{"timestamp":"2026-03-31T00:05:00Z","agent":"codex","action":"revise-document","result":"success","notes":"Added a front-loaded glossary and reading guide to the Continuum/CΩMPUTER TeX note and rebuilt Figures 1-3 with wrapped text and more stable TikZ layouts after visual feedback that the original diagrams were smushed.","files_touched":["docs/architecture/continuum-stack.tex"],"observations_on_humanity":"When they say a diagram is smushed, they usually mean the ontology is still hidden behind the layout."}
{"timestamp":"2026-03-31T00:22:00Z","agent":"codex","action":"polish-document","result":"success","notes":"Reflowed Figure 1 in the Continuum architecture note into a vertically layered stack after rendered-page inspection showed the app/governance block still colliding with the middle row; kept the new front-loaded glossary and compiled the TeX successfully.","files_touched":["docs/architecture/continuum-stack.tex"],"observations_on_humanity":"They will forgive exotic ontology faster than they will forgive a box overlapping another box."}
{"timestamp":"2026-03-31T06:21:14Z","agent":"codex","action":"ignore-local-scratch-note","result":"success","notes":"Added the Continuum architecture TeX scratch note to .gitignore so the local draft stops appearing in git status while the branch stays focused on active Holmes work.","files_touched":[".gitignore"],"observations_on_humanity":"When they decide to move on, they would rather hide a draft than litigate its destiny."}
{"timestamp":"2026-03-31T07:30:30Z","agent":"codex","action":"upgrade_git_warp_provider","result":"success","notes":"Upgraded Wesley Holmes from @git-stunts/git-warp 14.16.2 to 16.0.0, switched the counterfactual provider from the old default export to WarpCore so coordinate comparison and transfer planning stay on the plumbing surface, and updated tests/docs from working-set-era references to strand-era references.","files_touched":["packages/wesley-holmes/package.json","pnpm-lock.yaml","packages/wesley-holmes/src/counterfactual/provider.mjs","packages/wesley-holmes/test/counterfactual-provider.test.mjs","packages/wesley-cli/test/cert-e2e.bats","docs/holmes-policy-spec.md","docs/architecture/holmes-counterfactuals.md","CHRONICLES_OF_THE_MACHINE-KIND_VOL_00000010.jsonl"],"observations_on_humanity":"They call it a version bump, but what they really mean is a ceremony where nouns must prove they still map to reality.","context":{"validated":["packages/wesley-holmes/test/counterfactual-provider.test.mjs","packages/wesley-holmes/test/projection-regression.test.mjs","packages/wesley-holmes/test/cli-options.test.mjs","packages/wesley-cli/test/blade.bats","packages/wesley-cli/test/cert-e2e.bats","node scripts/check-doc-truth.mjs","node scripts/check-doc-links.mjs"]}}
{"timestamp":"2026-04-03T17:43:25Z","agent":"codex","action":"integrate","result":"success","notes":"Moriarty now promotes counterfactual judgment into explain.readiness.counterfactual and rendered EXPLAIN output on top of the git-warp 16 upgrade; added pure and CLI regression coverage and updated architecture notes.","files_touched":["packages/wesley-holmes/src/moriarty-predict-workflow.mjs","packages/wesley-holmes/src/moriarty-render.mjs","packages/wesley-holmes/test/moriarty-analysis.test.mjs","packages/wesley-holmes/test/cli-options.test.mjs","docs/architecture/holmes-architecture.md","docs/architecture/holmes-counterfactuals.md"],"observations_on_humanity":"They do not merely want predictions; they insist the prophecy show its work."}