Dear all,
Can someone please explain what would cause reads to be assigned to taxReads for no rank root?
Are they reads which can be classified but just not uniquely?
See the 57 reads in the KrakenUniq report bellow.
KrakenUniq Report
% reads taxReads kmers dup cov taxID rank taxName
0.06999 16 16 101539 1.06 0.0007595 0 no rank unclassified
99.93 22844 57 4085491 1.22 8.56e-05 1 no rank root
99.19 22675 0 4038991 1.22 8.526e-05 131567 no rank cellular organisms
...
Here's what these reads look like...
C M03901:710:000000000-LM4VW:1:2108:18162:5574 1 302 1:120 A:31 1:121
C M03901:710:000000000-LM4VW:1:1109:26723:17965 1 301 1:121 A:31 1:119
C M03901:710:000000000-LM4VW:1:1110:10566:6434 1 267 1:103 A:31 1:103
C M03901:710:000000000-LM4VW:1:1110:29104:15907 1 302 1:121 A:31 1:120
C M03901:710:000000000-LM4VW:1:1111:19257:7058 1 141 1:40 A:31 1:40
C M03901:710:000000000-LM4VW:1:1111:5749:10830 1 204 1:104 A:31 1:39
C M03901:710:000000000-LM4VW:1:1111:12731:13558 1 107 1:23 A:31 1:23
I'm trying to build a pipeline and need all reads to sum to the number of input reads.
Not sure how to categorize these reads as they don't go into any domain but are not unclassified.
Best,
Per
Dear all,
Can someone please explain what would cause reads to be assigned to taxReads for no rank root?
Are they reads which can be classified but just not uniquely?
See the 57 reads in the KrakenUniq report bellow.
KrakenUniq Report
Here's what these reads look like...
I'm trying to build a pipeline and need all reads to sum to the number of input reads.
Not sure how to categorize these reads as they don't go into any domain but are not unclassified.
Best,
Per