From 86f690d2226bbcb35066080d3f234d585be687e5 Mon Sep 17 00:00:00 2001
From: "google-labs-jules[bot]"
 <161369871+google-labs-jules[bot]@users.noreply.github.com>
Date: Sat, 7 Mar 2026 10:24:52 +0000
Subject: [PATCH 1/4] fix: remove engine="python" from pd.read_csv in datasets

Co-authored-by: derrynknife <18457108+derrynknife@users.noreply.github.com>
---
 surpyval/datasets/__init__.py | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/surpyval/datasets/__init__.py b/surpyval/datasets/__init__.py
index f83ca8d..d37741d 100755
--- a/surpyval/datasets/__init__.py
+++ b/surpyval/datasets/__init__.py
@@ -89,7 +89,7 @@ def load_bofors_steel():
     with importlib.resources.path(
         data_module, "bofors_steel.csv"
     ) as data_path:
-        return pd.read_csv(data_path, engine="python")
+        return pd.read_csv(data_path)
 
 
 def load_boston_housing():
@@ -109,7 +109,7 @@ def load_boston_housing():
 
     """
     with importlib.resources.path(data_module, "boston.csv") as data_path:
-        return pd.read_csv(data_path, engine="python")
+        return pd.read_csv(data_path)
 
 
 def load_g1_kaminskiy_krivtsov():
@@ -141,7 +141,7 @@ def load_heart_transplants():
     """
 
     with importlib.resources.path(data_module, "heart.csv") as data_path:
-        return pd.read_csv(data_path, engine="python")
+        return pd.read_csv(data_path)
 
 
 def load_lung():
@@ -160,7 +160,7 @@ def load_lung():
     """
 
     with importlib.resources.path(data_module, "lung.csv") as data_path:
-        return pd.read_csv(data_path, engine="python")
+        return pd.read_csv(data_path)
 
 
 def load_mettas_and_zhao():
@@ -246,7 +246,7 @@ def load_rossi_static():
     """
 
     with importlib.resources.path(data_module, "rossi.csv") as data_path:
-        return pd.read_csv(data_path, engine="python")
+        return pd.read_csv(data_path)
 
 
 def load_rossi_time_varying():
@@ -266,7 +266,7 @@ def load_rossi_time_varying():
     """
 
     with importlib.resources.path(data_module, "rossi_tv.csv") as data_path:
-        return pd.read_csv(data_path, engine="python")
+        return pd.read_csv(data_path)
 
 
 def load_tires_data():
@@ -282,7 +282,7 @@ def load_tires_data():
     """
 
     with importlib.resources.path(data_module, "tires.csv") as data_path:
-        return pd.read_csv(data_path, engine="python")
+        return pd.read_csv(data_path)
 
 
 def load_sae():

From b96ac2f74e449c9c359e9554b03e546ca13d7319 Mon Sep 17 00:00:00 2001
From: "google-labs-jules[bot]"
 <161369871+google-labs-jules[bot]@users.noreply.github.com>
Date: Sat, 7 Mar 2026 10:26:42 +0000
Subject: [PATCH 2/4] fix: remove engine="python" and update GitHub Action
 versions

Co-authored-by: derrynknife <18457108+derrynknife@users.noreply.github.com>
---
 .github/workflows/actions.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/actions.yml b/.github/workflows/actions.yml
index d554b7d..0fa7f35 100644
--- a/.github/workflows/actions.yml
+++ b/.github/workflows/actions.yml
@@ -11,10 +11,10 @@ jobs:
   surpyval_ci:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - name: Set-up Python 3.x
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: '3.10'
       
@@ -33,7 +33,7 @@ jobs:
           coverage html
 
       - name: Upload coverage html report artifact
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: coverage-html-report
           path: htmlcov/

From 680522008efddf59796a49885007bb3968560a22 Mon Sep 17 00:00:00 2001
From: "google-labs-jules[bot]"
 <161369871+google-labs-jules[bot]@users.noreply.github.com>
Date: Sat, 7 Mar 2026 10:29:44 +0000
Subject: [PATCH 3/4] fix: remove engine="python", update gh actions, and fix
 test dependencies

Co-authored-by: derrynknife <18457108+derrynknife@users.noreply.github.com>
---
 requirements.txt | 1 +
 1 file changed, 1 insertion(+)

diff --git a/requirements.txt b/requirements.txt
index f29c293..55bb0d6 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -3,5 +3,6 @@
 lifelines==0.27.4
 numba==0.56.4
 numpy-indexed==0.3.5
+numdifftools
 reliability==0.8.6
 matplotlib==3.6
\ No newline at end of file

From 8c8258d4512d18727a44f664a3d28207c7f56b9c Mon Sep 17 00:00:00 2001
From: "google-labs-jules[bot]"
 <161369871+google-labs-jules[bot]@users.noreply.github.com>
Date: Sat, 7 Mar 2026 10:37:48 +0000
Subject: [PATCH 4/4] fix: pin scipy and setuptools versions to restore
 lifelines compatibility

Co-authored-by: derrynknife <18457108+derrynknife@users.noreply.github.com>
---
 requirements.txt | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/requirements.txt b/requirements.txt
index 55bb0d6..0bccc85 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,6 +1,8 @@
 # Production requirements
 # For development, use requirements_dev.txt instead
 lifelines==0.27.4
+scipy<1.14
+setuptools<70
 numba==0.56.4
 numpy-indexed==0.3.5
 numdifftools