fixing docs

Author: marta-seq

docs/source/_build/html/.doctrees/api/index.doctree

@@ -15,28 +15,27 @@ This package provides core functionalities for extracting, organizing, and visua
 Public API Members
 ------------------
 
-.. autosummary::
-   :toctree: _autosummary/src
-   :template: autosummary/module_short.rst
-   :nosignatures:
-
-   src
-
-# If you have specific top-level classes or functions you know are directly
-# under 'src' (e.g., in src/__init__.py), you can add them here:
+# REMOVE the 'src' line from here. We'll use this autosummary block
+# when you have specific classes/functions/submodules to list.
+# For now, 'automodule' will handle the full documentation.
+# If you want to add specific top-level classes/functions later:
 
 # .. autosummary::
-#    :toctree: _autosummary/src  # <--- REMOVE the comment here if you uncomment this block!
+#    :toctree: _autosummary/src
 #    :template: autosummary/class.rst
 #    :nosignatures:
 #
 #    src.YourTopLevelClass
 #    src.AnotherClass
 
 # .. autosummary::
-#    :toctree: _autosummary/src  # <--- REMOVE the comment here if you uncomment this block!
+#    :toctree: _autosummary/src
 #    :template: autosummary/function.rst
 #    :nosignatures:
 #
 #    src.your_top_level_function
-#    src.another_function
+#    src.another_function
+
+# Sub-modules and more detailed content will go here once you are ready
+# to document them, similar to what we discussed previously.
+# For now, the 'automodule' above will list them implicitly if they are public members.