Enforcing unit8 and float32 types in the prediction files #55
Workflow file for this run
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| name: Build Universal Wheel | |
| on: | |
| push: | |
| branches: [ master,update ] | |
| pull_request: | |
| branches: [ master ] | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| include: | |
| - os: ubuntu-22.04 | |
| TARGET: ubuntu | |
| CMD_BUILD: python -m build --wheel | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.9" | |
| - name: Install dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install build | |
| - name: Built wheel for ${{matrix.TARGET}} | |
| run: ${{matrix.CMD_BUILD}} | |
| - name: Upload Python wheel | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Python wheel | |
| path: ${{github.workspace}}/dist/raidionicsseg-*.whl | |
| if-no-files-found: error | |
| setup-test-data: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.9 | |
| - name: Download test resources | |
| working-directory: tests | |
| run: | | |
| pip install requests | |
| python -c "from download_resources import download_resources; download_resources('../test_data')" | |
| - name: Upload test resources | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-resources | |
| path: ./test_data | |
| test: | |
| needs: [build, setup-test-data] | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| include: | |
| - os: ubuntu-22.04 | |
| python-version: "3.9" | |
| - os: ubuntu-22.04 | |
| python-version: "3.10" | |
| - os: ubuntu-22.04 | |
| python-version: "3.11" | |
| - os: ubuntu-22.04 | |
| python-version: "3.12" | |
| - os: ubuntu-22.04 | |
| python-version: "3.13" | |
| - os: ubuntu-24.04 | |
| python-version: "3.9" | |
| - os: ubuntu-24.04 | |
| python-version: "3.10" | |
| - os: ubuntu-24.04 | |
| python-version: "3.11" | |
| - os: ubuntu-24.04 | |
| python-version: "3.12" | |
| - os: ubuntu-24.04 | |
| python-version: "3.13" | |
| - os: windows-2022 | |
| python-version: "3.9" | |
| - os: windows-2022 | |
| python-version: "3.10" | |
| - os: windows-2022 | |
| python-version: "3.11" | |
| - os: windows-2022 | |
| python-version: "3.12" | |
| - os: windows-2022 | |
| python-version: "3.13" | |
| - os: windows-2025 | |
| python-version: "3.9" | |
| - os: windows-2025 | |
| python-version: "3.10" | |
| - os: windows-2025 | |
| python-version: "3.11" | |
| - os: windows-2025 | |
| python-version: "3.12" | |
| - os: windows-2025 | |
| python-version: "3.13" | |
| - os: macos-13 | |
| python-version: "3.9" | |
| - os: macos-13 | |
| python-version: "3.10" | |
| - os: macos-13 | |
| python-version: "3.11" | |
| - os: macos-13 | |
| python-version: "3.12" | |
| - os: macos-14 | |
| python-version: "3.10" | |
| - os: macos-14 | |
| python-version: "3.11" | |
| - os: macos-14 | |
| python-version: "3.12" | |
| - os: macos-14 | |
| python-version: "3.13" | |
| - os: macos-15 | |
| python-version: "3.10" | |
| - os: macos-15 | |
| python-version: "3.11" | |
| - os: macos-15 | |
| python-version: "3.12" | |
| - os: macos-15 | |
| python-version: "3.13" | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Download artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: "Python wheel" | |
| - name: Install wheel | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install --find-links=${{github.workspace}} --no-cache-dir --force-reinstall raidionicsseg-* | |
| shell: bash | |
| - name: Test CLI | |
| run: raidionicsseg --help | |
| - name: Clone repo | |
| uses: actions/checkout@v4 | |
| - name: Cleanup test environment on Linux/macOS | |
| if: runner.os != 'Windows' | |
| run: rm -rf test_env/ | |
| - name: Cleanup test environment on Windows | |
| if: runner.os == 'Windows' | |
| shell: pwsh | |
| run: | | |
| if (Test-Path "test_env") { | |
| Remove-Item -Recurse -Force "test_env" | |
| } | |
| - name: Create clean test environment | |
| run: | | |
| mkdir test_env | |
| cp -r tests test_env/ | |
| - name: Download test resources | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: test-resources | |
| path: ./test-env/unit_tests_results_dir | |
| - name: Integration tests | |
| run: | | |
| pip install pytest pytest-cov pytest-timeout requests | |
| cd test_env | |
| pytest -vvv --cov=raidionicsseg tests/generic_tests --cov-report=xml --timeout=1500 --log-cli-level=DEBUG | |
| - name: Upload coverage to Codecov | |
| if: ${{ matrix.os == 'ubuntu-22.04' && matrix.python-version == '3.9' }} | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| slug: dbouget/raidionics_seg_lib | |
| verbose: true |