Fix cluster matching in format_results utility #278
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| on: | |
| push: | |
| branches: [main, master, dev] | |
| pull_request: | |
| branches: [main, master] | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| name: pkgdown | |
| permissions: | |
| contents: write | |
| jobs: | |
| pkgdown: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libglpk-dev libcurl4-openssl-dev libssl-dev libxml2-dev libfontconfig1-dev libfreetype6-dev libfribidi-dev libharfbuzz-dev libpng-dev libtiff5-dev libcairo2-dev libxt-dev | |
| - name: Install required packages | |
| run: | | |
| install.packages(c("pkgdown", "knitr", "rmarkdown", "devtools", "systemfonts", "ragg", "textshaping", "svglite", "ggplot2", "patchwork", "viridis", "ggExtra", "remotes")) | |
| shell: Rscript {0} | |
| - name: Install package dependencies | |
| run: | | |
| devtools::install_deps("R", dependencies = TRUE) | |
| shell: Rscript {0} | |
| - name: Install package | |
| run: | | |
| devtools::install("R", upgrade = "never") | |
| shell: Rscript {0} | |
| - name: Verify package installation | |
| run: | | |
| library(mLLMCelltype) | |
| packageVersion("mLLMCelltype") | |
| shell: Rscript {0} | |
| - name: Build site | |
| run: | | |
| pkgdown::build_site("R") | |
| shell: Rscript {0} | |
| - name: Deploy to GitHub pages 🚀 | |
| if: github.event_name != 'pull_request' | |
| uses: JamesIves/github-pages-deploy-action@v4 | |
| with: | |
| branch: gh-pages | |
| folder: R/docs | |
| clean: true |