From a05793a84678eb0a8d50a580a858ffdd5b922b6f Mon Sep 17 00:00:00 2001 From: ejehleslie Date: Mon, 1 Jun 2026 10:28:42 -0400 Subject: [PATCH 1/3] First intial embedding file design --- public/msk_impact_50k_2026/data_embedding.txt | 3 +++ public/msk_impact_50k_2026/data_embedding_definition.txt | 3 +++ public/msk_impact_50k_2026/meta_embedding.txt | 1 + public/msk_impact_50k_2026/meta_embedding_definition.txt | 2 ++ 4 files changed, 9 insertions(+) create mode 100644 public/msk_impact_50k_2026/data_embedding.txt create mode 100644 public/msk_impact_50k_2026/data_embedding_definition.txt create mode 100644 public/msk_impact_50k_2026/meta_embedding.txt create mode 100644 public/msk_impact_50k_2026/meta_embedding_definition.txt diff --git a/public/msk_impact_50k_2026/data_embedding.txt b/public/msk_impact_50k_2026/data_embedding.txt new file mode 100644 index 000000000..e6e7dfdfb --- /dev/null +++ b/public/msk_impact_50k_2026/data_embedding.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6eb4d125abd80069ac09eaa16282627f69e4aa32a6952cc75149fb20f2a24f2e +size 175 diff --git a/public/msk_impact_50k_2026/data_embedding_definition.txt b/public/msk_impact_50k_2026/data_embedding_definition.txt new file mode 100644 index 000000000..b8cbb9152 --- /dev/null +++ b/public/msk_impact_50k_2026/data_embedding_definition.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d0a81d30355383fdc463ab6e9fa2a5464d9711513b3b80817966c881f28483d2 +size 53 diff --git a/public/msk_impact_50k_2026/meta_embedding.txt b/public/msk_impact_50k_2026/meta_embedding.txt new file mode 100644 index 000000000..a476a0dfc --- /dev/null +++ b/public/msk_impact_50k_2026/meta_embedding.txt @@ -0,0 +1 @@ +data_file: data_embedding.txt \ No newline at end of file diff --git a/public/msk_impact_50k_2026/meta_embedding_definition.txt b/public/msk_impact_50k_2026/meta_embedding_definition.txt new file mode 100644 index 000000000..c0978e2be --- /dev/null +++ b/public/msk_impact_50k_2026/meta_embedding_definition.txt @@ -0,0 +1,2 @@ +cancer_study_identifier: +data_filename: data_embedding_definition.txt \ No newline at end of file From fda21aef6bb77a9945afac88bd4d3201446ee735 Mon Sep 17 00:00:00 2001 From: ejehleslie Date: Mon, 1 Jun 2026 11:42:53 -0400 Subject: [PATCH 2/3] Cancer study id added --- public/msk_impact_50k_2026/meta_embedding_definition.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/public/msk_impact_50k_2026/meta_embedding_definition.txt b/public/msk_impact_50k_2026/meta_embedding_definition.txt index c0978e2be..86f3638ed 100644 --- a/public/msk_impact_50k_2026/meta_embedding_definition.txt +++ b/public/msk_impact_50k_2026/meta_embedding_definition.txt @@ -1,2 +1,2 @@ -cancer_study_identifier: +cancer_study_identifier: msk_impact_50k_2026 data_filename: data_embedding_definition.txt \ No newline at end of file From 8ca306048981020f7f8a9ce976b924e9dc4c9e88 Mon Sep 17 00:00:00 2001 From: ejehleslie Date: Sun, 7 Jun 2026 13:22:45 -0400 Subject: [PATCH 3/3] Added embedding_type to notify the importer it will be validating an embedding file --- public/msk_impact_50k_2026/meta_embedding.txt | 3 ++- public/msk_impact_50k_2026/meta_embedding_definition.txt | 3 ++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/public/msk_impact_50k_2026/meta_embedding.txt b/public/msk_impact_50k_2026/meta_embedding.txt index a476a0dfc..2ac7a456c 100644 --- a/public/msk_impact_50k_2026/meta_embedding.txt +++ b/public/msk_impact_50k_2026/meta_embedding.txt @@ -1 +1,2 @@ -data_file: data_embedding.txt \ No newline at end of file +data_filename: data_embedding.txt +embedding_type: DATA \ No newline at end of file diff --git a/public/msk_impact_50k_2026/meta_embedding_definition.txt b/public/msk_impact_50k_2026/meta_embedding_definition.txt index 86f3638ed..cedf4c500 100644 --- a/public/msk_impact_50k_2026/meta_embedding_definition.txt +++ b/public/msk_impact_50k_2026/meta_embedding_definition.txt @@ -1,2 +1,3 @@ cancer_study_identifier: msk_impact_50k_2026 -data_filename: data_embedding_definition.txt \ No newline at end of file +data_filename: data_embedding_definition.txt +embedding_type: DEFINITION \ No newline at end of file