diff --git a/scripts/filter_samples_from_otu_table.py b/scripts/filter_samples_from_otu_table.py index 26aa8e5719..ad0834cda7 100755 --- a/scripts/filter_samples_from_otu_table.py +++ b/scripts/filter_samples_from_otu_table.py @@ -62,7 +62,7 @@ help='Path to file listing sample ids to keep. Valid formats for the file are: 1) any white space, newline, or tab delimited list of samples, 2) a mapping file with samples in the first column [default: %default]'), make_option('-s', '--valid_states', type='string', - help="string describing valid states (e.g. 'Treatment:Fasting') [default: %default]"), + help="string describing valid states (e.g. 'Treatment:Fasting' or 'Treatment:*,!Control;Age:19,20,21') [default: %default]"), make_option('-n', '--min_count', type='int',