TOmicsVis/DESCRIPTION at main · benben-miao/TOmicsVis · GitHub

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Package: TOmicsVis
Type: Package
Title: TOmicsVis an All-in-One Transcriptomic Analysis and Visualization R Package with Shinyapp Interface
Version: 0.99.0
Date: 2026-05-18
Authors@R: c(
    person(given = "Benben", family = "Miao", email = "benben.miao@outlook.com",
    			 role = c("aut", "cre"), comment = c(ORCID = "0000-0002-7307-1331")),
    person(given = 'Wei', family = 'Dong', email = 'dwei1220779@gmail.com',
           role = c("aut"), comment = c(ORCID = '0000-0003-2201-7164'))
	)
Description: Transcriptome visualization from sample trait statistics to gene expression analysis. Six categories include "Samples Statistics", "Traits Analysis", "Differential Expression Analysis", "Advanced Analysis", "GO and KEGG Enrichment", "Tables Operations", with complete sample data.
URL: https://benben-miao.github.io/TOmicsVis/
BugReports: https://github.com/benben-miao/TOmicsVis/issues/
License: MIT + file LICENSE
Roxygen: list(markdown = TRUE)
Encoding: UTF-8
biocViews: Software, Visualization, DifferentialExpression, GeneExpression,
    GO, KEGG, Clustering, DimensionReduction, Network,
    DataRepresentation
Depends:
    R (>= 4.0),
    Biobase,
    Mfuzz,
    e1071
Imports:
    stats,
    utils,
    grid,
    graphics,
    grDevices,
    ggplot2,
    dplyr,
    tidyr,
    shiny,
    WGCNA,
    pheatmap,
    Rtsne,
    umap,
    survival,
    igraph,
    circlize,
    ggsci,
    ggforce,
    stringr,
    vegan,
    ggrepel,
    ggnewscale,
    enrichplot,
    ComplexHeatmap,
    EnhancedVolcano,
    clusterProfiler,
    survminer,
    GGally,
    factoextra,
    venn,
    UpSetR,
    randomcoloR,
    ggcorrplot,
    tidyselect
Suggests:
    knitr,
    rmarkdown,
    bs4Dash,
    DT,
    colourpicker,
    shinyWidgets,
    Biostrings,
    plotrix,
    ggpubr,
    ggpolypath,
    testthat
VignetteBuilder: knitr
Config/roxygen2/version: 8.0.0