fastqc-viz/_pkgdown.yml at main · barreiro-r/fastqc-viz · GitHub

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url: https://barreiro-r.github.io/fastqc-viz/
template:
  bootstrap: 5

reference:
- title: "FastQC parsing"
  desc: >
    Functions to parse the original FastQC.
  contents:
  - parse_fastqc
  - separate_modules
  - module_content_to_tibble

- title: "Create HTML file"
  desc: >
    Functions to create the HTML file.
  contents:
  - create_fastqcviz_report
  - create_all_plots

- title: "Create HTML elements"
  desc: >
    Functions to create the HTML elements.
  contents:
  - create_header
  - plot_basic_statistics
  - plot_overrepresented_sequences
  - plot_status_summary
  - status_to_pill

- title: "Plot functions"
  desc: >
    Functions to create the plots for the FastQC report.
  contents:
  - plot_adapter_content
  - plot_per_base_n_content
  - plot_per_base_sequence_quality
  - plot_per_sequence_gc_content
  - plot_per_sequence_quality_scores
  - plot_sequence_duplication_levels
  - plot_sequence_length_distribution

- title: "Styling"
  desc: >
    Functions to style the plots.
  contents:
  - theme_set_fastqcviz
  - get_color_palette

- title: "Other functions"
  contents:
  - format_large_numbers
  - process_gc_data
  - add_all_plots_list

- title: "Decrepated functions"
  contents:
  - status_to_pill