Aggregate documentation

Author: github-actions

ArviZExampleData/dev/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.11.5","generation_timestamp":"2025-06-25T01:58:19","documenter_version":"1.13.0"}}
+{"documenter":{"julia_version":"1.11.5","generation_timestamp":"2025-06-26T01:57:03","documenter_version":"1.13.0"}}

ArviZExampleData/dev/api/index.html

@@ -31,4 +31,4 @@
   > prior
   > prior_predictive
   > observed_data
-  &gt; constant_data</code></pre></div><a class="docs-sourcelink" href="https://github.com/arviz-dev/ArviZExampleData.jl/blob/cd6b428fc7ff9cbfee7e450c2a53a63d6065dd46/src/load.jl#L1-L41" target="_blank">source</a></section></article></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../datasets/">« Datasets</a><a class="docs-footer-nextpage" href="../for_developers/">For developers »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label></p><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div><p></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.13.0 on <span class="colophon-date" title="Wednesday 25 June 2025 01:58">Wednesday 25 June 2025</span>. Using Julia version 1.11.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></HTML>
+  &gt; constant_data</code></pre></div><a class="docs-sourcelink" href="https://github.com/arviz-dev/ArviZExampleData.jl/blob/cd6b428fc7ff9cbfee7e450c2a53a63d6065dd46/src/load.jl#L1-L41" target="_blank">source</a></section></article></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../datasets/">« Datasets</a><a class="docs-footer-nextpage" href="../for_developers/">For developers »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label></p><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div><p></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.13.0 on <span class="colophon-date" title="Thursday 26 June 2025 01:57">Thursday 26 June 2025</span>. Using Julia version 1.11.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></HTML>

ArviZExampleData/dev/datasets/index.html

@@ -98,4 +98,4 @@
 
 This model uses a Von Mises distribution to propose torsion angles for the structure of a glycan molecule (pdb id: 2LIQ), and a Potential to estimate the proposed structure's energy. Said Potential is bound by Boltzman's law.
 
-remote: http://ndownloader.figshare.com/files/22882652</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« Home</a><a class="docs-footer-nextpage" href="../api/">API »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label></p><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div><p></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.13.0 on <span class="colophon-date" title="Wednesday 25 June 2025 01:58">Wednesday 25 June 2025</span>. Using Julia version 1.11.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></HTML>
+remote: http://ndownloader.figshare.com/files/22882652</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« Home</a><a class="docs-footer-nextpage" href="../api/">API »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label></p><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div><p></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.13.0 on <span class="colophon-date" title="Thursday 26 June 2025 01:57">Thursday 26 June 2025</span>. Using Julia version 1.11.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></HTML>

ArviZExampleData/dev/for_developers/index.html

@@ -4,4 +4,4 @@
 
 julia> tarball_url = "https://github.com/arviz-devs/arviz_example_data/archive/refs/tags/v$version.tar.gz";
 
-julia&gt; add_artifact!("Artifacts.toml", "arviz_example_data", tarball_url; force=true);</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../api/">« API</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label></p><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div><p></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.13.0 on <span class="colophon-date" title="Wednesday 25 June 2025 01:58">Wednesday 25 June 2025</span>. Using Julia version 1.11.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></HTML>
+julia&gt; add_artifact!("Artifacts.toml", "arviz_example_data", tarball_url; force=true);</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../api/">« API</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label></p><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div><p></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.13.0 on <span class="colophon-date" title="Thursday 26 June 2025 01:57">Thursday 26 June 2025</span>. Using Julia version 1.11.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></HTML>

ArviZExampleData/dev/index.html

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.11.5","generation_timestamp":"2025-06-25T01:50:03","documenter_version":"1.13.0"}}
+{"documenter":{"julia_version":"1.11.5","generation_timestamp":"2025-06-26T01:47:45","documenter_version":"1.13.0"}}

PSIS/dev/.documenter-siteinfo.json

@@ -40,4 +40,4 @@
 x = rand(proposal, 1_000, 100)
 log_ratios = logpdf.(target, x) .- logpdf.(proposal, x)
 result = psis(log_ratios)
-paretoshapeplot(result)</code></pre><p>We can also plot the Pareto shape parameters directly:</p><pre><code class="language-julia hljs">paretoshapeplot(result.pareto_shape)</code></pre><p>We can also use <code>plot</code> directly:</p><pre><code class="language-julia hljs">plot(result.pareto_shape; showlines=true)</code></pre></div><a class="docs-sourcelink" href="https://github.com/arviz-devs/PSIS.jl/blob/35b9e716d1e479fb8db3af33141a65895001b818/src/recipes/plots.jl#L11-L49" target="_blank">source</a></section></article></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../plotting/">« Plotting</a><a class="docs-footer-nextpage" href="../internal/">Internal »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label></p><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div><p></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.13.0 on <span class="colophon-date" title="Wednesday 25 June 2025 01:50">Wednesday 25 June 2025</span>. Using Julia version 1.11.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></HTML>
+paretoshapeplot(result)</code></pre><p>We can also plot the Pareto shape parameters directly:</p><pre><code class="language-julia hljs">paretoshapeplot(result.pareto_shape)</code></pre><p>We can also use <code>plot</code> directly:</p><pre><code class="language-julia hljs">plot(result.pareto_shape; showlines=true)</code></pre></div><a class="docs-sourcelink" href="https://github.com/arviz-devs/PSIS.jl/blob/35b9e716d1e479fb8db3af33141a65895001b818/src/recipes/plots.jl#L11-L49" target="_blank">source</a></section></article></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../plotting/">« Plotting</a><a class="docs-footer-nextpage" href="../internal/">Internal »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label></p><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div><p></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.13.0 on <span class="colophon-date" title="Thursday 26 June 2025 01:47">Thursday 26 June 2025</span>. Using Julia version 1.11.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></HTML>

PSIS/dev/api/index.html

@@ -13,4 +13,4 @@
  (-Inf, 0.5]  good       7 (23.3%)  959
   (0.5, 0.7]  okay      <span class="sgr33">13 (43.3%)</span>  938
     (0.7, 1]  bad       <span class="sgr91"><span class="sgr1"> 9 (30.0%)</span></span>  ——
-    (1, Inf)  very bad  <span class="sgr31"><span class="sgr1"> 1 (3.3%) </span></span>  ——</code></pre><p>As indicated by the warnings, this is a poor choice of a proposal distribution, and estimates are unlikely to converge (see <a href="api/#PSIS.PSISResult"><code>PSISResult</code></a> for an explanation of the shape thresholds).</p><p>When running PSIS with many parameters, it is useful to plot the Pareto shape values to diagnose convergence. See <a href="plotting/#Plotting-PSIS-results">Plotting PSIS results</a> for examples.</p></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="plotting/">Plotting »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label></p><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div><p></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.13.0 on <span class="colophon-date" title="Wednesday 25 June 2025 01:50">Wednesday 25 June 2025</span>. Using Julia version 1.11.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></HTML>
+    (1, Inf)  very bad  <span class="sgr31"><span class="sgr1"> 1 (3.3%) </span></span>  ——</code></pre><p>As indicated by the warnings, this is a poor choice of a proposal distribution, and estimates are unlikely to converge (see <a href="api/#PSIS.PSISResult"><code>PSISResult</code></a> for an explanation of the shape thresholds).</p><p>When running PSIS with many parameters, it is useful to plot the Pareto shape values to diagnose convergence. See <a href="plotting/#Plotting-PSIS-results">Plotting PSIS results</a> for examples.</p></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="plotting/">Plotting »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label></p><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div><p></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.13.0 on <span class="colophon-date" title="Thursday 26 June 2025 01:47">Thursday 26 June 2025</span>. Using Julia version 1.11.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></HTML>