BIO373 Next Generation Sequencing for Evolutionary Functional Genomics

14 Sep. -07 Oct., 2020

Masaomi Hatakeyama

• https://github.com/masaomi/Bio373_2020

How to download/update this documents

Download

$ git clone https://github.com/masaomi/Bio334_2020

Updating

$ git pull

Table of Content (Plan)

17 Sep
13.00-	Basic NGS analyses (Lecture) Bio373_2020_NGS_Bioinformatics.ipynb
14.00-	Basic Informatics (Lecture) Bio373_2020_Linux.ipynb
15.00-	Practice Bio373_2020_Command_Practice.md
1 Oct
9.00-	RNAseq analyses (Lecture) Bio373_2020_RNAseq_analysis1.ipynb
13.00-	Practice (coming soon)
2 Oct
9.00-17.00	RNAseq real analysis (coming soon)

References

Linux/Shell

• Software Carpentry tutorial - The Unix shell
• Interactive course
• Cheatsheet
• SIB e-learning: UNIX fundamentals
• Explain shell commands
• Tips & Tricks for using the shell on Mac OS
• Safe Bash scripting