Tests

Merge pull request #26 from IEDB/counts-only #148

	name: Tests

	on:
	push:
	branches:
	- master
	pull_request:
	branches:
	- master

	jobs:
	test:
	name: Run Test - ${{ matrix.name }}
	runs-on: ubuntu-latest

	strategy:
	matrix:
	include:
	- name: Exact Match
	test-file: pepmatch/tests/test_exact_match.py
	- name: Mismatch
	test-file: pepmatch/tests/test_mismatching.py
	- name: Best Match
	test-file: pepmatch/tests/test_best_match.py
	- name: Discontinuous Epitope
	test-file: pepmatch/tests/test_discontinuous_search.py
	- name: Output
	test-file: pepmatch/tests/test_output.py

	steps:
	- name: Checkout Code
	uses: actions/checkout@v3

	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: '3.11'

	- name: Install Dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -e .
	pip install pytest

	- name: Run Test
	run: pytest ${{ matrix.test-file }}

	linter:
	name: Ruff Linter
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- uses: chartboost/ruff-action@v1

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