DESCRIPTION

Package: SummarizedExperiment
Title: A container (S4 class) for matrix-like assays
Description: The SummarizedExperiment container contains one or more assays,
	each represented by a matrix-like object of numeric or other mode.
	The rows typically represent genomic ranges of interest and the columns
	represent samples.
biocViews: Genetics, Infrastructure, Sequencing, Annotation, Coverage,
	GenomeAnnotation
URL: https://bioconductor.org/packages/SummarizedExperiment
BugReports: https://github.com/Bioconductor/SummarizedExperiment/issues
Version: 1.43.0
License: Artistic-2.0
Encoding: UTF-8
Authors@R: c(
	person("Martin", "Morgan", role="aut"),
	person("Valerie", "Obenchain", role="aut"),
	person("Jim", "Hester", role="aut"),
	person("Hervé", "Pagès", role=c("aut", "cre"),
		email="hpages.on.github@gmail.com"))
Depends: R (>= 4.0.0), methods, MatrixGenerics (>= 1.1.3),
	GenomicRanges (>= 1.61.4), Biobase
Imports: utils, stats, tools, Matrix,
	BiocGenerics (>= 0.51.3), S4Vectors (>= 0.33.7), IRanges (>= 2.23.9),
	Seqinfo, S4Arrays (>= 1.1.1), DelayedArray (>= 0.31.12)
Suggests: GenomeInfoDb (>= 1.45.5), rhdf5, HDF5Array (>= 1.7.5), annotate,
	AnnotationDbi, GenomicFeatures, SparseArray, SingleCellExperiment,
	TxDb.Hsapiens.UCSC.hg19.knownGene, hgu95av2.db, airway (>= 1.15.1),
	BiocStyle, knitr, rmarkdown, RUnit, testthat, digest
VignetteBuilder: knitr
Collate: Assays-class.R
	SummarizedExperiment-class.R
	RangedSummarizedExperiment-class.R
	intra-range-methods.R
	inter-range-methods.R
	coverage-methods.R
	combine-methods.R
	findOverlaps-methods.R
	nearest-methods.R
	makeSummarizedExperimentFromExpressionSet.R
	makeSummarizedExperimentFromDataFrame.R
	makeSummarizedExperimentFromLoom.R
	zzz.R