diff --git a/anndata-zarr/.eslintrc.json b/anndata-zarr/.eslintrc.json new file mode 100644 index 00000000..69304d74 --- /dev/null +++ b/anndata-zarr/.eslintrc.json @@ -0,0 +1,43 @@ +{ + "extends": ["react-app", "prettier", "plugin:import/errors", "plugin:import/warnings", "plugin:prettier/recommended"], + "settings": { + "import/resolver": { + "node": { + "extensions": [".js", ".jsx", ".ts", ".tsx"] + }, + "alias": { + "map": [["@app", "./src"]], + "extensions": [".js", ".jsx", ".ts", ".tsx"] + } + } + }, + "rules": { + "import/order": [ + "error", + { + "groups": ["builtin", "external", "internal", ["parent", "sibling"], "index"], + "pathGroups": [ + { + "pattern": "react", + "group": "external", + "position": "before" + } + ], + "pathGroupsExcludedImportTypes": ["react"], + "newlines-between": "always", + "alphabetize": { + "order": "asc", + "caseInsensitive": true + } + } + ], + "prettier/prettier": [ + "error", + { + "singleQuote": true, + "tabWidth": 2, + "useTabs": false + } + ] + } +} diff --git a/anndata-zarr/.gitignore b/anndata-zarr/.gitignore new file mode 100644 index 00000000..a547bf36 --- /dev/null +++ b/anndata-zarr/.gitignore @@ -0,0 +1,24 @@ +# Logs +logs +*.log +npm-debug.log* +yarn-debug.log* +yarn-error.log* +pnpm-debug.log* +lerna-debug.log* + +node_modules +dist +dist-ssr +*.local + +# Editor directories and files +.vscode/* +!.vscode/extensions.json +.idea +.DS_Store +*.suo +*.ntvs* +*.njsproj +*.sln +*.sw? diff --git a/anndata-zarr/package.json b/anndata-zarr/package.json new file mode 100644 index 00000000..3e1fce12 --- /dev/null +++ b/anndata-zarr/package.json @@ -0,0 +1,51 @@ +{ + "name": "@biongff/anndata-zarr", + "private": true, + "version": "0.0.0", + "type": "module", + "main": "dist/biongff-anndata-zarr.cjs.js", + "module": "dist/biongff-anndata-zarr.es.js", + "files": [ + "dist" + ], + "exports": { + ".": { + "import": "./dist/biongff-anndata-zarr.es.js", + "require": "./dist/biongff-anndata-zarr.cjs.js" + }, + "./dist/anndata-zarr.css": "./dist/anndata-zarr.css" + }, + "scripts": { + "dev": "vite", + "build": "vite build", + "lint": "eslint .", + "lint:fix": "eslint . --fix", + "preview": "vite preview", + "test": "vitest" + }, + "dependencies": { + "@tanstack/react-query": "^5.85.3", + "@types/lodash": "^4.17.24", + "hyparquet": "^1.25.6", + "lodash": "^4.17.21", + "react-window": "^2.0.2", + "yaml": "^2.8.2", + "zarrita": "0.5.0", + "zod": "^4.4.3", + "react": "^18.2.0" + }, + "peerDependencies": { + "@emotion/react": "^11.14.0", + "@emotion/styled": "^11.14.1", + "@mui/icons-material": "^7.2.0", + "@mui/material": "^7.2.0", + "react-dom": "^18.2.0" + }, + "devDependencies": { + "@vitejs/plugin-react": "^4.3.3", + "typescript": "^5.8.2", + "vite": "^6.2.3", + "vite-plugin-dts": "^4.5.4", + "vitest": "^3.0.8" + } +} diff --git a/anndata-zarr/src/anndata.ts b/anndata-zarr/src/anndata.ts new file mode 100644 index 00000000..ab600d31 --- /dev/null +++ b/anndata-zarr/src/anndata.ts @@ -0,0 +1,221 @@ +import type { URL } from "node:url"; +import { FetchStore, open } from "zarrita"; +import { z } from "zod"; +import type { FeatureMetadata, ObservationMetadata, ObservationParams } from "./hooks"; +import { fetchZarrGroup, getData } from "./zarr"; + +const OBSERVATION_NAMES_PATH = "obs"; +const FEATURE_NAMES_PATH = "var"; +const CATEGORY_NAMES_PATH = "categories"; +const CATEGORY_DATA_PATH = "codes"; +const VAR_NAMES_PATH = "_index"; + +export interface Observation { + name: string; +} +export interface CategoricalObservation extends Observation { + categories: string[]; +} + +const ZarrAttrsSchema = z.object({ + "encoding-type": z.enum(["anndata", "dataframe", "array", "categorical", "string-array"]), + "encoding-version": z.string(), +}); + +const ZarrObservationAttrsSchema = ZarrAttrsSchema.extend({ + "column-order": z.array(z.string()), + _index: z.string().optional(), +}); + +const AnndataCategoriesSchema = z.array(z.string()); + +function parseZarrObservationAttrs(attrs: unknown): z.infer { + return ZarrObservationAttrsSchema.parse(attrs); +} + +function parseZarrAttrs(attrs: unknown): z.infer { + return ZarrAttrsSchema.parse(attrs); +} + +const IntegerArraySchema = z.array(z.number().int().or(z.nan())); + +const FloatArraySchema = z.array(z.number().or(z.nan())); + +const StringArraySchema = z.array(z.string()); + +const BooleanArraySchema = z.array(z.boolean()); + +const parseIntegerArray = (data: unknown): z.infer => IntegerArraySchema.parse(data); + +function parseFloatArray(data: unknown[]): z.infer { + return FloatArraySchema.parse(data); +} + +function parseStringArray(data: unknown[]): z.infer { + return StringArraySchema.parse(data); +} + +function parseBooleanArray(data: unknown[]): number[] { + const parsedData = BooleanArraySchema.parse(data); + return parsedData.map((value: boolean) => Number(value)); +} + +const getDataPath = (encodingType: string): string | undefined => { + if (encodingType === "categorical") { + return CATEGORY_DATA_PATH; + } + return ""; +}; +export const fetchDataFromZarr = async ( + url: URL, + path: string, + slice: (number | null)[] | undefined, +): Promise<{ data: number[]; categories?: string[] }> => { + const root = await fetchZarrGroup(url); + const dataNodeOrGroup = await open(root.resolve(path)); + const attrs = parseZarrAttrs(dataNodeOrGroup.attrs); + const dataPath = `${path}/${getDataPath(attrs["encoding-type"])}`; + const { data, dtype } = await getData(root, dataPath, slice); + if (dtype === "bool") { + const parsedData = parseBooleanArray(data); + return { + data: parsedData, + categories: ["false", "true"], + }; + } + if (attrs["encoding-type"] === "categorical") { + const parsedData = parseIntegerArray(data); + const categoryNamesPath = `${path}/${CATEGORY_NAMES_PATH}`; + const categories = await getData(root, categoryNamesPath); + const categoryNames = parseStringArray(categories.data); + + return { + data: parsedData, + categories: categoryNames, + }; + } + if (attrs["encoding-type"] === "array") { + const parsedData = parseFloatArray(data); + return { + data: parsedData, + }; + } + return { data: [] }; +}; + +export async function getLabels(url: URL): Promise<(FeatureMetadata | ObservationMetadata)[]> { + const featureNames = await getFeatureNames(url); + const observationNames = await getObservationNames(url); + return [...featureNames, ...observationNames]; +} + +export const getFeatureNames = async (url: URL): Promise => { + try { + const root = await fetchZarrGroup(url); + + const node = await open(root.resolve(FEATURE_NAMES_PATH)); + const parsedAttrs = ZarrObservationAttrsSchema.parse(node.attrs); + const path = `${FEATURE_NAMES_PATH}/${parsedAttrs._index}`; + const { data, dtype } = await getData(root, path); + + const parsedData = parseStringArray(data); + + return parsedData.map((name) => { + return { + type: "feature", + labelIndex: name, + }; + }); + } catch (error) { + console.error(error); + return []; + } +}; + +function getObservationNamesPath(encodingType: string): string { + if (encodingType === "categorical") { + return CATEGORY_NAMES_PATH; + } + return ""; +} + +export const getObservationNames = async (url: URL): Promise> => { + try { + const root = await fetchZarrGroup(url); + + const node = await open(root.resolve(OBSERVATION_NAMES_PATH), { kind: "group" }); + console.log("Fetching observation names from attrs:", node.attrs); + const attrs = parseZarrObservationAttrs(node.attrs); + const cols = attrs["column-order"]; + const obs = await Promise.all( + cols.map(async (col) => { + const dataNodeOrGroup = await open(root.resolve(`${OBSERVATION_NAMES_PATH}/${col}`)); + const parsedAttrs = ZarrAttrsSchema.parse(dataNodeOrGroup.attrs); + const dataPath = `${OBSERVATION_NAMES_PATH}/${col}/${getObservationNamesPath(parsedAttrs["encoding-type"])}`; + const dataNode = await open(root.resolve(dataPath), { kind: "array" }); + + const metadata: ObservationMetadata = { type: "observation", labelIndex: col }; + if (dataNode.dtype === "bool") { + metadata.categories = ["false", "true"]; + return metadata; + } + + if (parsedAttrs["encoding-type"] === "array") { + return metadata; + } + + if (parsedAttrs["encoding-type"] === "categorical") { + const { data, dtype } = await getData(root, dataPath); + const parsedCategories = AnndataCategoriesSchema.parse(data); + metadata.categories = parsedCategories; + return metadata; + } + return undefined; + }), + ); + return obs.filter((observation) => observation !== undefined); + } catch (error) { + console.error(error); + return []; + } +}; + +const ARRAY_PATH = "X"; + +export const getVarIndex = async (url: URL, varId: string, namesCol = VAR_NAMES_PATH) => { + const store = new FetchStore(url); + const node = await open(store, { kind: "group" }); + + const { data, dtype } = await getData(node, `${VAR_NAMES_PATH}/${namesCol}`); + + const varNames = parseStringArray(data); + const varIndex = varNames.findIndex((name: string) => name === varId); + return varIndex; +}; + +export async function getFeatureDataPath( + url: URL, + index: string, + name?: string, +): Promise<{ path: string; slice: (number | null)[] }> { + if (index) { + return { + path: ARRAY_PATH, + slice: [null, Number(index)], + }; + } + if (name) { + return { + path: ARRAY_PATH, + slice: [null, await getVarIndex(url, name)], + }; + } + throw new Error("Index or name needed to determine feature data path"); +} + +export async function getObservationDataPath(name: string): Promise<{ path: string; slice: undefined }> { + return { + path: `${OBSERVATION_NAMES_PATH}/${name}`, + slice: undefined, + }; +} diff --git a/anndata-zarr/src/components/AnndataController.tsx b/anndata-zarr/src/components/AnndataController.tsx new file mode 100644 index 00000000..eaf4b40b --- /dev/null +++ b/anndata-zarr/src/components/AnndataController.tsx @@ -0,0 +1,83 @@ +import React, { useEffect, useState } from "react"; + +import Box from "@mui/material/Box"; +import Stack from "@mui/material/Stack"; + +import { FeatureSelect } from "./FeatureSelect"; +import { ObsSelect } from "./ObsSelect"; + +import { useAnndataColors, useTableLabels } from "../hooks"; +export type LabelType = "observation" | "feature"; + +export type labelColor = { + labelValue: number; + rgba: [r: number, g: number, b: number, a: number]; + value?: string | number | null; +}; + +export const AnndataController = ({ + adata, + callback = () => {}, +}: { adata: string; callback: (colorData: labelColor[] | null) => void }) => { + const [selectedLabel, setSelectedLabel] = useState<{ labelIndex: string; type: LabelType } | undefined>(undefined); + + const url = { url: new URL(adata) }; + + function handleLabelSelect(labelIndex: string, labelType: "feature" | "observation") { + setSelectedLabel({ + labelIndex: labelIndex, + type: labelType, + }); + } + + const labels = useTableLabels(url.url); + + //A necessary evil for now, I think in principle the UI should be more or less agnostic of whether it is an observation or a feature. + const selectedLabelDisplayData = + labels.data && selectedLabel + ? labels.data.filter((label) => label.labelIndex === selectedLabel.labelIndex)[0] + : undefined; + const selectedFeature = + selectedLabelDisplayData?.type === "feature" ? selectedLabelDisplayData.labelIndex : undefined; + const selectedObservation = + selectedLabelDisplayData?.type === "observation" ? selectedLabelDisplayData.labelIndex : undefined; + + const colorData = useAnndataColors(url.url, selectedLabel, { enabled: !!selectedLabel }); + + useEffect(() => { + if (colorData?.isError) { + callback(null); + return; + } + if (!colorData?.isLoading && colorData?.data) { + callback(colorData.data.colors); + } + }, [colorData, callback]); + + return ( + + + {labels.data && ( + label.type === "feature") + .map((metadata) => metadata.labelIndex)} + selectedFeatureIndex={selectedFeature} + onFeatureSelect={handleLabelSelect} + legendData={selectedFeature ? colorData.data : undefined} + /> + )} + + + {labels.data && ( + label.type === "observation")} + selectedObservation={selectedObservation} + onObservationSelect={handleLabelSelect} + legendData={selectedObservation ? colorData.data : undefined} + /> + )} + + + ); +}; diff --git a/anndata-zarr/src/components/FeatureSelect.tsx b/anndata-zarr/src/components/FeatureSelect.tsx new file mode 100644 index 00000000..c68c6df2 --- /dev/null +++ b/anndata-zarr/src/components/FeatureSelect.tsx @@ -0,0 +1,105 @@ +import type React from "react"; +import { useEffect, useMemo, useState } from "react"; + +import Box from "@mui/material/Box"; +import ListItem from "@mui/material/ListItem"; +import ListItemButton from "@mui/material/ListItemButton"; +import ListItemText from "@mui/material/ListItemText"; +import Stack from "@mui/material/Stack"; +import TextField from "@mui/material/TextField"; +import { List } from "react-window"; + +import type { ColourProps, Feature } from "../hooks"; +import { Legend } from "./Legend"; + +const RowComponent = ({ + index, + items, + style, + onSelect, + selectedIndex, +}: { + index: number; + items: { matrixIndex: number; name: string }[]; + style: React.DetailedHTMLProps, HTMLStyleElement>; + onSelect: (labelIndex: string, labelType: "observation" | "feature") => void; + selectedIndex?: number; +}) => { + return ( + + onSelect(items[index].name, "feature")} + selected={items[index].matrixIndex === selectedIndex} + > + + + + ); +}; +export const FeatureSelect = ({ + featureNames, + selectedFeatureIndex, + onFeatureSelect, + legendData, +}: { + featureNames: string[]; + selectedFeatureIndex?: string; + onFeatureSelect: (labelIndex: string, labelType: "observation" | "feature") => void; + legendData?: ColourProps; +}) => { + const [searchTerm, setSearchTerm] = useState(""); + + const items = useMemo(() => { + const allItems = featureNames.map((name: string, index: number) => { + return { + name: name, + matrixIndex: index, + }; + }); + if (!searchTerm) { + return allItems; + } + return allItems.filter((item) => item.name.toLowerCase().includes(searchTerm.toLowerCase())); + }, [featureNames, searchTerm]); + + const legend = useMemo(() => { + if (legendData?.colorscale) { + return ; + } + }, [legendData]); + + return ( + + + setSearchTerm(e.target.value)} + /> + + {legend} + + + ); +}; diff --git a/anndata-zarr/src/components/Legend.tsx b/anndata-zarr/src/components/Legend.tsx new file mode 100644 index 00000000..0ebfb249 --- /dev/null +++ b/anndata-zarr/src/components/Legend.tsx @@ -0,0 +1,25 @@ +import React, { useMemo } from "react"; + +import _ from "lodash"; + +import { getColor } from "../utils"; + +export const Legend = ({ min, max, colorscale }: { min: number; max: number; colorscale: string[] }) => { + const spanList = useMemo(() => { + return _.range(100).map((i) => { + const color = getColor({ value: i / 100, colorscale }); + return ; + }); + }, [colorscale]); + + return ( +
+
+ {spanList} + {min.toFixed(2)} + {((min + max) / 2).toFixed(2)} + {max.toFixed(2)} +
+
+ ); +}; diff --git a/anndata-zarr/src/components/ObsSelect.tsx b/anndata-zarr/src/components/ObsSelect.tsx new file mode 100644 index 00000000..6627c010 --- /dev/null +++ b/anndata-zarr/src/components/ObsSelect.tsx @@ -0,0 +1,139 @@ +import React, { useMemo, useState } from "react"; + +import ExpandLess from "@mui/icons-material/ExpandLess"; +import ExpandMore from "@mui/icons-material/ExpandMore"; +import Alert from "@mui/material/Alert"; +import Box from "@mui/material/Box"; +import Collapse from "@mui/material/Collapse"; +import Divider from "@mui/material/Divider"; +import FormControl from "@mui/material/FormControl"; +import FormControlLabel from "@mui/material/FormControlLabel"; +import List from "@mui/material/List"; +import ListItem from "@mui/material/ListItem"; +import ListItemIcon from "@mui/material/ListItemIcon"; +import ListItemText from "@mui/material/ListItemText"; +import Radio from "@mui/material/Radio"; +import RadioGroup from "@mui/material/RadioGroup"; +import Stack from "@mui/material/Stack"; + +import type { CategoricalObservation, Observation } from "../anndata"; +import { COLORSCALES } from "../constants/colorscales"; +import type { ColourProps, ObservationMetadata } from "../hooks"; +import { getColor } from "../utils"; +import { Legend } from "./Legend"; + +// @TODO: fix styling (width) +const CategoricalCol = ({ + name, + categories, + showColor = false, +}: { name: string; categories: string[]; showColor: boolean }) => { + const [open, setOpen] = useState(false); + + return ( + + setOpen(!open)} sx={{ display: "flex", alignItems: "center", cursor: "pointer" }}> + e.stopPropagation()} />} + label={name} + key={name} + value={name} + /> + {open ? : } + + + {categories.length > 100 && ( + + Truncated to 100 categories + + )} + + {categories.slice(0, 100).map((cat, i) => ( + + {showColor && ( + + + + )} + + + ))} + + + + ); +}; + +const NumericalCol = ({ name }: { name: string }) => { + return } label={name} key={name} value={name} />; +}; +interface ObservationControlsProps { + observations: ObservationMetadata[]; + selectedObservation?: string; + onObservationSelect: (labelIndex: string, labelType: "observation" | "feature") => void; + legendData?: ColourProps; +} + +export const ObsSelect = ({ + observations, + selectedObservation, + onObservationSelect, + legendData, +}: ObservationControlsProps) => { + const legend = useMemo(() => { + if (legendData?.colorscale) { + return ; + } + }, [legendData]); + + return ( + + + Observations + + + onObservationSelect(e.target.value, "observation")} + > + Categorical + {observations + ?.filter((obs) => "categories" in obs) + .map((observation) => ( + + ))} + Numerical + {observations + ?.filter((obs) => !("categories" in obs)) + .map((observation) => ( + + ))} + + + + {!!selectedObservation && legend} + + + ); +}; diff --git a/anndata-zarr/src/constants/colorscales.ts b/anndata-zarr/src/constants/colorscales.ts new file mode 100644 index 00000000..4d7ec392 --- /dev/null +++ b/anndata-zarr/src/constants/colorscales.ts @@ -0,0 +1,89 @@ +// From plotly https://github.com/plotly/plotly.js/blob/5bc25b490702e5ed61265207833dbd58e8ab27f1/src/components/colorscale/scales.js +export const COLORSCALES = { + Greys: ["#000000", "#ffffff"], + + YlGnBu: ["#081d58", "#253494", "#225ea8", "#1d91c0", "#41b6c4", "#7fcdbb", "#c7e9b4", "#edf8d9", "#ffffd9"], + + Greens: ["#00441b", "#006d2c", "#238b45", "#41ab5d", "#74c476", "#a1d9a5", "#c7e9c0", "#e5f5e0", "#f7fcf5"], + + YlOrRd: ["#800026", "#bd0026", "#e31a1c", "#fc4e2a", "#fd8d3c", "#feb24c", "#fed976", "#ffed9f", "#ffffcc"], + + Bluered: ["#0000ff", "#ff0000"], + + RdBu: ["#050aac", "#6a89f7", "#bebebe", "#dcaa84", "#e6915a", "#b20a1c"], + + Reds: ["#dcdcdc", "#f5c39d", "#f5a069", "#b20a1c"], + + Blues: ["#050aac", "#283cba", "#4664f5", "#5a78f5", "#6a89f7", "#dcdcdc"], + + Picnic: [ + "#0000ff", + "#3399ff", + "#66ccff", + "#99ccff", + "#ccccff", + "#ffffff", + "#ffccff", + "#ff99ff", + "#ff66cc", + "#ff6666", + "#ff0000", + ], + + Rainbow: ["#96005a", "#0000c8", "#0019ff", "#0098ff", "#2cff96", "#97ff00", "#ffe600", "#ff6f00", "#ff0000"], + + Portland: ["#0c3383", "#0a88ba", "#f2d338", "#f28f38", "#d91e1e"], + + Jet: ["#000083", "#003caa", "#05ffff", "#ffff00", "#fa0000", "#800000"], + + Hot: ["#000000", "#e60000", "#ffd200", "#ffffff"], + + Blackbody: ["#000000", "#e60000", "#e6d200", "#ffffff", "#a0c8ff"], + + Earth: ["#000082", "#00b4b4", "#28d228", "#e6e632", "#784614", "#ffffff"], + + Electric: ["#000000", "#1e0064", "#780064", "#a05a00", "#e6c800", "#fffadc"], + + Viridis: [ + "#440154", + "#48186a", + "#472d7b", + "#424086", + "#3b528b", + "#33638d", + "#2c728e", + "#26828e", + "#21918c", + "#1fa088", + "#28ae80", + "#3fbc73", + "#5ec962", + "#84d44b", + "#addc30", + "#d8e219", + "#fde725", + ], + + Cividis: [ + "#00204c", + "#002a66", + "#00346e", + "#273f6c", + "#3c4a6c", + "#4c556b", + "#5b5f6d", + "#686a70", + "#757575", + "#838178", + "#929c78", + "#a19676", + "#b0a572", + "#c0af6d", + "#d1ba65", + "#e1c75c", + "#f3db4f", + "#ffe945", + ], + + Accent: ["#7fc97f", "#beaed4", "#fdc086", "#ffff99", "#386cb0", "#f0027f", "#bf5b17", "#666666"], +}; diff --git a/anndata-zarr/src/hooks.ts b/anndata-zarr/src/hooks.ts new file mode 100644 index 00000000..c0372f08 --- /dev/null +++ b/anndata-zarr/src/hooks.ts @@ -0,0 +1,193 @@ +import { type UseQueryResult, useQueries, useQuery } from "@tanstack/react-query"; +import _ from "lodash"; +import { useCallback } from "react"; + +import type { argv0 } from "node:process"; +import { + fetchDataFromZarr, + getFeatureDataPath, + getFeatureNames, + getLabels, + getObservationDataPath, + getObservationNames, +} from "./anndata"; +import type { LabelType, labelColor } from "./components/AnndataController"; +import { COLORSCALES } from "./constants/colorscales"; +import { getColors } from "./utils"; + +export interface Feature { + index: string; + name?: string; + namesCol?: string; +} + +export interface MatrixProps { + feature?: { + index?: number; + name?: string; + namesCol?: string; + }; + obs?: { + col?: string; + }; +} + +interface ColourData { + colors: labelColor[]; + min: number; + max: number; + categories?: string[]; + colorscale?: string[]; +} + +export interface ColourProps { + min: number; + max: number; + colorscale?: string[]; +} + +export interface AnndataURL { + url: URL; +} + +export interface FeatureParams { + type: "feature"; + index: number; +} +export interface ObservationParams { + type: "observation"; + index: string; +} + +export const getAnndataColors = async ( + url: URL, + labelQueryParameters: LabelQueryParameters | undefined, + colorProps?: ColourProps, +): Promise => { + //Basically to satisfy typescript, this function should never be called with undefined query parameters. + if (typeof labelQueryParameters === "undefined") { + return Promise.reject(new Error("Invalid params")); + } + + if (labelQueryParameters.type !== "feature" && labelQueryParameters.type !== "observation") { + throw new Error("Unknown table parameter type: ", labelQueryParameters.type); + } + + let path: { path: string; slice: undefined | (number | null)[] }; + + if (labelQueryParameters.type === "feature") { + path = await getFeatureDataPath(url, labelQueryParameters.labelIndex); + } else { + path = await getObservationDataPath(labelQueryParameters.labelIndex); + } + const data = await fetchDataFromZarr(url, path.path, path.slice); + let min = 0; + let max = 0; + + let colorscale: string[] | undefined; + let categories: string[] | undefined; + if ("categories" in data && data.categories) { + const categories = data.categories; + max = categories.length - 1; + min = 0; + colorscale = COLORSCALES.Accent; + } else { + max = colorProps?.max || _.max(data.data) || 0; + min = colorProps?.min || _.min(data.data) || 0; + colorscale = colorProps?.colorscale; + } + const colours = getColors({ + data: data.data, + max, + min, + colorscale: colorscale, + categories, + }); + return { + colors: colours, + max, + min, + categories, + colorscale, + }; +}; + +type LabelQueryParameters = { + type: LabelType; + labelIndex: string; +}; + +export type FeatureMetadata = { + type: "feature"; + labelIndex: string; + categories?: string[]; +}; + +export type ObservationMetadata = { + type: "observation"; + labelIndex: string; + categories?: string[]; +}; + +export function useTableLabels(url: URL): UseQueryResult<(FeatureMetadata | ObservationMetadata)[]> { + const labels = useQuery({ + queryKey: ["labels", url], + queryFn: () => getLabels(url), + }); + + return labels; +} + +export const useAnndataColors = ( + url: URL, + labelQueryParameters: LabelQueryParameters | undefined, + opts = {}, +): UseQueryResult => { + const result = useQuery({ + queryKey: ["anndataColor", url, labelQueryParameters], + queryFn: () => getAnndataColors(url, labelQueryParameters), + ...opts, + }); + return result; +}; + +export const useAnndatasColors = (adatas = [], opts = {}) => { + const combine = useCallback((results: UseQueryResult[]) => { + return { + data: results.map((result) => result.data), + isLoading: results.some((result) => result.isLoading), + serverError: results.find((result) => result.error), + }; + }, []); + + const { + data = null, + isLoading = false, + serverError = null, + } = useQueries({ + queries: adatas.map(({ url, matrixProps, colorProps }) => ({ + queryKey: ["anndataColor", url, matrixProps, colorProps], + queryFn: () => getAnndataColors(url, matrixProps, colorProps), + })), + ...opts, + combine, + }); + + return { data, isLoading, serverError }; +}; + +export const useAnndataFeatures = (adata: AnndataURL): UseQueryResult => { + const result = useQuery({ + queryKey: ["anndataFeatures", adata.url], + queryFn: () => getFeatureNames(adata.url), + }); + return result; +}; + +export const useAnndataObs = (adata: AnndataURL): UseQueryResult => { + const result = useQuery({ + queryKey: ["anndataObs", adata.url], + queryFn: () => getObservationNames(adata.url), + }); + return result; +}; diff --git a/anndata-zarr/src/index.css b/anndata-zarr/src/index.css new file mode 100644 index 00000000..ada27f24 --- /dev/null +++ b/anndata-zarr/src/index.css @@ -0,0 +1,37 @@ +.grad-step { + display: inline-block; + height: 20px; + width: 1%; +} + +.gradient { + width: 100%; + white-space: nowrap; + position: relative; + display: inline-block; + top: 4px; + padding-bottom: 15px; +} + +.gradient .domain-min { + position: absolute; + left: 0; + font-size: 11px; + bottom: 3px; +} + +.gradient .domain-mid { + position: absolute; + right: 25%; + left: 25%; + text-align: center; + font-size: 11px; + bottom: 3px; +} + +.gradient .domain-max { + position: absolute; + right: 0; + font-size: 11px; + bottom: 3px; +} diff --git a/anndata-zarr/src/index.ts b/anndata-zarr/src/index.ts new file mode 100644 index 00000000..16c0aa80 --- /dev/null +++ b/anndata-zarr/src/index.ts @@ -0,0 +1,8 @@ +import "./index.css"; + +//export { useAnndataColors } from "./hooks"; +export { AnndataProvider } from "./provider"; +export { COLORSCALES } from "./constants/colorscales"; +export { FeatureSelect } from "./components/FeatureSelect"; +export { ObsSelect } from "./components/ObsSelect"; +export { AnndataController } from "./components/AnndataController"; diff --git a/anndata-zarr/src/provider.tsx b/anndata-zarr/src/provider.tsx new file mode 100644 index 00000000..ffe16326 --- /dev/null +++ b/anndata-zarr/src/provider.tsx @@ -0,0 +1,9 @@ +import type React from "react"; + +import { QueryClient, QueryClientProvider } from "@tanstack/react-query"; + +const queryClient = new QueryClient(); + +export function AnndataProvider({ children }: { children: React.JSX.Element[] }) { + return {children}; +} diff --git a/anndata-zarr/src/utils.ts b/anndata-zarr/src/utils.ts new file mode 100644 index 00000000..62055daa --- /dev/null +++ b/anndata-zarr/src/utils.ts @@ -0,0 +1,60 @@ +import _ from "lodash"; + +import type { labelColor } from "./components/AnndataController"; +import { COLORSCALES } from "./constants/colorscales"; + +const parseHexColor = (color: string): [r: number, g: number, b: number] => { + const r = Number.parseInt(color?.substring(1, 3), 16); + const g = Number.parseInt(color?.substring(3, 5), 16); + const b = Number.parseInt(color?.substring(5, 7), 16); + + return [r, g, b]; +}; + +const interpolateColor = (color1: string, color2: string, factor: number): [r: number, g: number, b: number] => { + const [r1, g1, b1] = parseHexColor(color1); + const [r2, g2, b2] = parseHexColor(color2); + + const r = Math.round(r1 + factor * (r2 - r1)); + const g = Math.round(g1 + factor * (g2 - g1)); + const b = Math.round(b1 + factor * (b2 - b1)); + + return [r, g, b]; +}; + +const computeColor = (colormap: string[], value: number): [r: number, g: number, b: number] => { + if (!colormap || Number.isNaN(value)) { + return [0, 0, 0]; + } + if (value <= 0) { + return parseHexColor(colormap[0]); + } + if (value >= 1) { + return parseHexColor(colormap[colormap.length - 1]); + } + const index1 = Math.floor(value * (colormap.length - 1)); + const index2 = Math.ceil(value * (colormap.length - 1)); + const factor = (value * (colormap.length - 1)) % 1; + return interpolateColor(colormap[index1], colormap[index2], factor); +}; + +export const getColor = ({ + value, + colorscale = COLORSCALES.Viridis, +}: { value: number; colorscale?: string[] }): [r: number, g: number, b: number, a: number] => { + return [...computeColor(colorscale, value), 255]; +}; + +export const getColors = ({ + data, + max, + min, + colorscale, + categories, +}: { data: number[]; max: number; min: number; colorscale?: string[]; categories?: string[] }): labelColor[] => { + return _.map(data, (v: number, i: number) => ({ + labelValue: i + 1, + rgba: getColor({ value: (v - min) / (max - min), colorscale }), + value: categories ? (categories[v] ?? v) : v, + })); +}; diff --git a/anndata-zarr/src/zarr.ts b/anndata-zarr/src/zarr.ts new file mode 100644 index 00000000..7c2811f9 --- /dev/null +++ b/anndata-zarr/src/zarr.ts @@ -0,0 +1,27 @@ +import { FetchStore, type Group, type Readable, get, open } from "zarrita"; +import { z } from "zod"; + +const ZarrDataSchema = z.object({ + data: z.any(), +}); + +export async function fetchZarrGroup(url: URL): Promise> { + const store = new FetchStore(url); + return await open(store, { kind: "group" }); +} + +export async function getData( + root: Group, + path: string, + slice?: (number | null)[], +): Promise<{ data: unknown[]; dtype: string }> { + const dataNode = await open(root.resolve(path), { kind: "array" }); + const data = await get(dataNode, slice); + const parsedData = ZarrDataSchema.parse(data); + try { + const arrayData = Array.from(parsedData.data); + return { data: arrayData, dtype: dataNode.dtype }; + } catch (error) { + throw new Error(`Could not parse Zarr array data at ${path}. Error: ${error}`); + } +} diff --git a/anndata-zarr/tests/expected_colours.json b/anndata-zarr/tests/expected_colours.json new file mode 100644 index 00000000..fe68a5eb --- /dev/null +++ b/anndata-zarr/tests/expected_colours.json @@ -0,0 +1,67 @@ +{ + "colors": [ + { "labelValue": 1, "rgba": [68, 57, 130, 255], "value": 0.1658300302601523 }, + { "labelValue": 2, "rgba": [34, 143, 140, 255], "value": 0.4891459405665751 }, + { "labelValue": 3, "rgba": [191, 223, 38, 255], "value": 0.8974329354849481 }, + { "labelValue": 4, "rgba": [69, 8, 91, 255], "value": 0.023533927427546897 }, + { "labelValue": 5, "rgba": [163, 218, 54, 255], "value": 0.8563984648832248 }, + { "labelValue": 6, "rgba": [222, 227, 27, 255], "value": 0.9432887992234683 }, + { "labelValue": 7, "rgba": [199, 224, 34, 255], "value": 0.9090499221056513 }, + { "labelValue": 8, "rgba": [110, 206, 89, 255], "value": 0.772540518883162 }, + { "labelValue": 9, "rgba": [164, 218, 54, 255], "value": 0.8577915438512621 }, + { "labelValue": 10, "rgba": [224, 227, 28, 255], "value": 0.9458883944319205 }, + { "labelValue": 11, "rgba": [67, 60, 132, 255], "value": 0.17752092088363824 }, + { "labelValue": 12, "rgba": [185, 222, 41, 255], "value": 0.888718367894147 }, + { "labelValue": 13, "rgba": [31, 157, 137, 255], "value": 0.5504706652423125 }, + { "labelValue": 14, "rgba": [187, 222, 40, 255], "value": 0.8912855692053849 }, + { "labelValue": 15, "rgba": [37, 133, 142, 255], "value": 0.45122083454421824 }, + { "labelValue": 16, "rgba": [69, 53, 128, 255], "value": 0.15447245437137225 }, + { "labelValue": 17, "rgba": [35, 140, 141, 255], "value": 0.48013174167796535 }, + { "labelValue": 18, "rgba": [69, 9, 92, 255], "value": 0.024812424216993034 }, + { "labelValue": 19, "rgba": [35, 139, 141, 255], "value": 0.4748136489032414 }, + { "labelValue": 20, "rgba": [241, 229, 33, 255], "value": 0.9753731220887473 }, + { "labelValue": 21, "rgba": [135, 213, 73, 255], "value": 0.813230676083472 }, + { "labelValue": 22, "rgba": [70, 11, 94, 255], "value": 0.030333847161120864 }, + { "labelValue": 23, "rgba": [63, 73, 136, 255], "value": 0.22004476431310427 }, + { "labelValue": 24, "rgba": [253, 231, 37, 255], "value": 0.9948084537223887 }, + { "labelValue": 25, "rgba": [42, 121, 142, 255], "value": 0.4005457376940761 }, + { "labelValue": 26, "rgba": [172, 220, 49, 255], "value": 0.8686849274738432 }, + { "labelValue": 27, "rgba": [89, 199, 101, 255], "value": 0.7362613877052966 }, + { "labelValue": 28, "rgba": [71, 39, 118, 255], "value": 0.10972745888698887 }, + { "labelValue": 29, "rgba": [36, 135, 141, 255], "value": 0.4582572201664642 }, + { "labelValue": 30, "rgba": [199, 224, 34, 255], "value": 0.9081289285441259 }, + { "labelValue": 31, "rgba": [71, 19, 102, 255], "value": 0.05310654963214745 }, + { "labelValue": 32, "rgba": [57, 86, 139, 255], "value": 0.26427251460612133 }, + { "labelValue": 33, "rgba": [51, 98, 141, 255], "value": 0.3098868831143512 }, + { "labelValue": 34, "rgba": [71, 45, 123, 255], "value": 0.12859385219192254 }, + { "labelValue": 35, "rgba": [71, 38, 117, 255], "value": 0.1060341064816438 }, + { "labelValue": 36, "rgba": [56, 88, 140, 255], "value": 0.273146979830608 }, + { "labelValue": 37, "rgba": [94, 201, 98, 255], "value": 0.7474387872660285 }, + { "labelValue": 38, "rgba": [79, 195, 106, 255], "value": 0.7168943965063371 }, + { "labelValue": 39, "rgba": [31, 159, 136, 255], "value": 0.5567800064876861 }, + { "labelValue": 40, "rgba": [118, 208, 84, 255], "value": 0.785358005462284 }, + { "labelValue": 41, "rgba": [181, 221, 44, 255], "value": 0.8820685615410931 }, + { "labelValue": 42, "rgba": [177, 221, 46, 255], "value": 0.8764131827619143 }, + { "labelValue": 43, "rgba": [69, 6, 89, 255], "value": 0.016894230930217247 }, + { "labelValue": 44, "rgba": [69, 4, 87, 255], "value": 0.011590410943970952 }, + { "labelValue": 45, "rgba": [76, 194, 108, 255], "value": 0.7116094880320885 }, + { "labelValue": 46, "rgba": [54, 92, 140, 255], "value": 0.2881044279476044 }, + { "labelValue": 47, "rgba": [213, 226, 27, 255], "value": 0.9282508060940267 }, + { "labelValue": 48, "rgba": [40, 125, 142, 255], "value": 0.4158803393647662 }, + { "labelValue": 49, "rgba": [66, 64, 134, 255], "value": 0.19045753449072 }, + { "labelValue": 50, "rgba": [45, 112, 142, 255], "value": 0.36713928055013845 }, + { "labelValue": 51, "rgba": [207, 225, 30, 255], "value": 0.9194919597647628 }, + { "labelValue": 52, "rgba": [56, 89, 140, 255], "value": 0.2772744211351149 }, + { "labelValue": 53, "rgba": [54, 92, 140, 255], "value": 0.2887579479880511 }, + { "labelValue": 54, "rgba": [56, 89, 140, 255], "value": 0.2767322711017376 }, + { "labelValue": 55, "rgba": [90, 200, 100, 255], "value": 0.739933093943506 }, + { "labelValue": 56, "rgba": [71, 42, 121, 255], "value": 0.11849387104612308 }, + { "labelValue": 57, "rgba": [37, 132, 142, 255], "value": 0.4465532692621863 }, + { "labelValue": 58, "rgba": [140, 214, 70, 255], "value": 0.8211443808344999 }, + { "labelValue": 59, "rgba": [32, 162, 135, 255], "value": 0.5709565352647414 }, + { "labelValue": 60, "rgba": [68, 1, 84, 255], "value": 0.0034096290176031108 }, + { "labelValue": 61, "rgba": [60, 79, 138, 255], "value": 0.24026647309570515 } + ], + "max": 0.9948084537223887, + "min": 0.0034096290176031108 +} diff --git a/anndata-zarr/tests/test.test.ts b/anndata-zarr/tests/test.test.ts new file mode 100644 index 00000000..3adf321b --- /dev/null +++ b/anndata-zarr/tests/test.test.ts @@ -0,0 +1,17 @@ +import fs from "node:fs"; +import path from "node:path"; +import { expect, test } from "vitest"; +import yaml from "yaml"; +import expectedColours from "./expected_colours.json"; + +import { getAnndataColors } from "../src/hooks"; + +const fixtures_path = path.resolve(path.join(__dirname, "..", "..", "fixtures")); + +test("Can get anndata colours", async () => { + const table = yaml.parse(fs.readFileSync(path.join(fixtures_path, "anndata_table.yaml"), "utf-8")); + + const colours = await getAnndataColors(table.source, { type: "feature", labelIndex: "3" }); + + expect(colours).toEqual(expectedColours); +}); diff --git a/anndata-zarr/tsconfig.json b/anndata-zarr/tsconfig.json new file mode 100644 index 00000000..62b84831 --- /dev/null +++ b/anndata-zarr/tsconfig.json @@ -0,0 +1,14 @@ +{ + "compilerOptions": { + "module": "esnext", + "target": "esnext", + "moduleResolution": "bundler", + "noEmit": true, + "strict": true, + "skipLibCheck": true, + "forceConsistentCasingInFileNames": true, + "verbatimModuleSyntax": true, + "jsx": "preserve", + "types": ["vite/client"] + } +} diff --git a/anndata-zarr/types.ts b/anndata-zarr/types.ts new file mode 100644 index 00000000..e69de29b diff --git a/anndata-zarr/vite.config.js b/anndata-zarr/vite.config.js new file mode 100644 index 00000000..056ed352 --- /dev/null +++ b/anndata-zarr/vite.config.js @@ -0,0 +1,27 @@ +import path from "node:path"; +import react from "@vitejs/plugin-react"; +import { defineConfig } from "vite"; +import dts from "vite-plugin-dts"; + +// https://vite.dev/config/ +export default defineConfig({ + plugins: [react(), dts({ rollupTypes: true, tsconfigPath: "./tsconfig.json" })], + build: { + // outDir: path.resolve(__dirname, '../dist'), + lib: { + entry: path.resolve(__dirname, "src/index.js"), + name: "BiongffAnndataZarr", + formats: ["es", "cjs"], + fileName: (format) => `biongff-anndata-zarr.${format}.js`, + }, + rollupOptions: { + external: ["react", "react-dom", "@mui/material", "@mui/icons-material", "@emotion/react", "@emotion/styled"], + output: { + globals: { + react: "React", + "react-dom": "ReactDOM", + }, + }, + }, + }, +}); diff --git a/fixtures/anndata_table.yaml b/fixtures/anndata_table.yaml new file mode 100644 index 00000000..141cd55c --- /dev/null +++ b/fixtures/anndata_table.yaml @@ -0,0 +1 @@ +source: https://storage.googleapis.com/haniffalab/test/zarr/6001240_labels-anndata.zarr diff --git a/package.json b/package.json index c116e69c..e25bd0e3 100644 --- a/package.json +++ b/package.json @@ -7,12 +7,13 @@ "dev": "pnpm --filter app dev", "lint": "biome ci", "fix": "biome check --write", - "check": "pnpm build:viewer && pnpm build:roi-selector && pnpm -r run check", + "check": "pnpm build:viewer && pnpm build:anndata-zarr && pnpm build:roi-selector && pnpm -r run check", "build:viewer": "pnpm --filter vizarr build", "build:roi-selector": "pnpm --filter @biongff/roi-selector build", "build:app": "pnpm --filter app build", - "test": "vitest", - "build": "pnpm build:viewer && pnpm build:roi-selector && pnpm build:app" + "build:anndata-zarr": "pnpm --filter anndata-zarr build", + "build": "pnpm build:viewer && pnpm build:anndata-zarr && pnpm build:roi-selector && pnpm build:app", + "test": "vitest" }, "devDependencies": { "@biomejs/biome": "^1.9.4", diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml index 5c6f8617..0ee5a256 100644 --- a/pnpm-lock.yaml +++ b/pnpm-lock.yaml @@ -18,52 +18,113 @@ importers: version: 1.9.4 '@semantic-release/changelog': specifier: ^6.0.3 - version: 6.0.3(semantic-release@25.0.2(typescript@5.8.2)) + version: 6.0.3(semantic-release@25.0.3(typescript@5.9.3)) '@semantic-release/commit-analyzer': specifier: ^13.0.1 - version: 13.0.1(semantic-release@25.0.2(typescript@5.8.2)) + version: 13.0.1(semantic-release@25.0.3(typescript@5.9.3)) '@semantic-release/exec': specifier: ^7.1.0 - version: 7.1.0(semantic-release@25.0.2(typescript@5.8.2)) + version: 7.1.0(semantic-release@25.0.3(typescript@5.9.3)) '@semantic-release/git': specifier: ^10.0.1 - version: 10.0.1(semantic-release@25.0.2(typescript@5.8.2)) + version: 10.0.1(semantic-release@25.0.3(typescript@5.9.3)) '@semantic-release/github': specifier: ^12.0.2 - version: 12.0.2(semantic-release@25.0.2(typescript@5.8.2)) + version: 12.0.8(semantic-release@25.0.3(typescript@5.9.3)) '@semantic-release/npm': specifier: ^13.1.1 - version: 13.1.1(semantic-release@25.0.2(typescript@5.8.2)) + version: 13.1.5(semantic-release@25.0.3(typescript@5.9.3)) '@semantic-release/release-notes-generator': specifier: ^14.1.0 - version: 14.1.0(semantic-release@25.0.2(typescript@5.8.2)) + version: 14.1.1(semantic-release@25.0.3(typescript@5.9.3)) '@types/node': specifier: ^24.3.0 - version: 24.3.0 + version: 24.12.4 '@types/react': specifier: ^18.3.10 - version: 18.3.18 + version: 18.3.30 '@types/react-dom': specifier: ^18.2.18 - version: 18.3.5(@types/react@18.3.18) + version: 18.3.7(@types/react@18.3.30) '@vitejs/plugin-react': specifier: ^4.3.4 - version: 4.3.4(vite@6.2.7(@types/node@24.3.0)(yaml@2.8.2)) + version: 4.7.0(vite@6.4.3(@types/node@24.12.4)(yaml@2.9.0)) '@vitest/coverage-v8': specifier: 4.0.15 - version: 4.0.15(vitest@4.0.15(@types/node@24.3.0)(yaml@2.8.2)) + version: 4.0.15(vitest@4.1.8) semantic-release: specifier: ^25.0.2 - version: 25.0.2(typescript@5.8.2) + version: 25.0.3(typescript@5.9.3) typescript: specifier: ^5.8.2 - version: 5.8.2 + version: 5.9.3 vite: specifier: ^6.2.7 - version: 6.2.7(@types/node@24.3.0)(yaml@2.8.2) + version: 6.4.3(@types/node@24.12.4)(yaml@2.9.0) vitest: specifier: ^4.0.15 - version: 4.0.15(@types/node@24.3.0)(yaml@2.8.2) + version: 4.1.8(@types/node@24.12.4)(@vitest/coverage-v8@4.0.15)(vite@6.4.3(@types/node@24.12.4)(yaml@2.9.0)) + + anndata-zarr: + dependencies: + '@emotion/react': + specifier: ^11.14.0 + version: 11.14.0(@types/react@18.3.30)(react@18.3.1) + '@emotion/styled': + specifier: ^11.14.1 + version: 11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1) + '@mui/icons-material': + specifier: ^7.2.0 + version: 7.3.11(@mui/material@7.3.11(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react-dom@18.3.1(react@18.3.1))(react@18.3.1))(@types/react@18.3.30)(react@18.3.1) + '@mui/material': + specifier: ^7.2.0 + version: 7.3.11(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react-dom@18.3.1(react@18.3.1))(react@18.3.1) + '@tanstack/react-query': + specifier: ^5.85.3 + version: 5.101.0(react@18.3.1) + '@types/lodash': + specifier: ^4.17.24 + version: 4.17.24 + hyparquet: + specifier: ^1.25.6 + version: 1.26.0 + lodash: + specifier: ^4.17.21 + version: 4.18.1 + react: + specifier: ^18.2.0 + version: 18.3.1 + react-dom: + specifier: ^18.2.0 + version: 18.3.1(react@18.3.1) + react-window: + specifier: ^2.0.2 + version: 2.2.7(react-dom@18.3.1(react@18.3.1))(react@18.3.1) + yaml: + specifier: ^2.8.2 + version: 2.9.0 + zarrita: + specifier: 0.5.0 + version: 0.5.0 + zod: + specifier: ^4.4.3 + version: 4.4.3 + devDependencies: + '@vitejs/plugin-react': + specifier: ^4.3.3 + version: 4.7.0(vite@6.4.3(@types/node@24.12.4)(yaml@2.9.0)) + typescript: + specifier: ^5.8.2 + version: 5.9.3 + vite: + specifier: ^6.2.3 + version: 6.4.3(@types/node@24.12.4)(yaml@2.9.0) + vite-plugin-dts: + specifier: ^4.5.4 + version: 4.5.4(@types/node@24.12.4)(rollup@4.61.0)(typescript@5.9.3)(vite@6.4.3(@types/node@24.12.4)(yaml@2.9.0)) + vitest: + specifier: ^3.0.8 + version: 3.2.6(@types/node@24.12.4)(yaml@2.9.0) roi-selector: dependencies: @@ -72,19 +133,19 @@ importers: version: link:../viewer '@emotion/react': specifier: ^11.14.0 - version: 11.14.0(@types/react@18.3.18)(react@18.3.1) + version: 11.14.0(@types/react@18.3.30)(react@18.3.1) '@emotion/styled': specifier: ^11.14.1 - version: 11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1) + version: 11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1) '@mui/icons-material': specifier: ^7.2.0 - version: 7.3.4(@mui/material@7.3.4(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react-dom@18.3.1(react@18.3.1))(react@18.3.1))(@types/react@18.3.18)(react@18.3.1) + version: 7.3.11(@mui/material@7.3.11(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react-dom@18.3.1(react@18.3.1))(react@18.3.1))(@types/react@18.3.30)(react@18.3.1) '@mui/material': specifier: ^7.2.0 - version: 7.3.4(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react-dom@18.3.1(react@18.3.1))(react@18.3.1) + version: 7.3.11(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react-dom@18.3.1(react@18.3.1))(react@18.3.1) deck.gl: specifier: ~9.0.0 - version: 9.0.41(@arcgis/core@4.32.8(@lit/context@1.1.6))(react-dom@18.3.1(react@18.3.1))(react@18.3.1) + version: 9.0.41(@arcgis/core@4.34.8)(react-dom@18.3.1(react@18.3.1))(react@18.3.1) react: specifier: ^18.2.0 version: 18.3.1 @@ -97,43 +158,46 @@ importers: devDependencies: '@types/react': specifier: ^18.3.10 - version: 18.3.18 + version: 18.3.30 '@types/react-dom': specifier: ^18.2.18 - version: 18.3.5(@types/react@18.3.18) + version: 18.3.7(@types/react@18.3.30) '@vitejs/plugin-react': specifier: ^4.3.4 - version: 4.3.4(vite@6.2.7(@types/node@24.3.0)(yaml@2.8.2)) + version: 4.7.0(vite@6.4.3(@types/node@24.12.4)(yaml@2.9.0)) typescript: specifier: ^5.8.2 - version: 5.8.2 + version: 5.9.3 vite: specifier: ^6.2.7 - version: 6.2.7(@types/node@24.3.0)(yaml@2.8.2) + version: 6.4.3(@types/node@24.12.4)(yaml@2.9.0) vite-plugin-dts: specifier: ^4.5.4 - version: 4.5.4(@types/node@24.3.0)(rollup@4.40.1)(typescript@5.8.2)(vite@6.2.7(@types/node@24.3.0)(yaml@2.8.2)) + version: 4.5.4(@types/node@24.12.4)(rollup@4.61.0)(typescript@5.9.3)(vite@6.4.3(@types/node@24.12.4)(yaml@2.9.0)) sites/app: dependencies: + '@biongff/anndata-zarr': + specifier: workspace:anndata-zarr + version: link:../../anndata-zarr '@biongff/roi-selector': specifier: workspace:* version: link:../../roi-selector '@biongff/vizarr': - specifier: workspace:* + specifier: workspace:viewer version: link:../../viewer '@emotion/react': specifier: ^11.14.0 - version: 11.14.0(@types/react@18.3.18)(react@18.3.1) + version: 11.14.0(@types/react@18.3.30)(react@18.3.1) '@emotion/styled': specifier: ^11.14.1 - version: 11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1) + version: 11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1) '@mui/icons-material': specifier: ^7.2.0 - version: 7.3.4(@mui/material@7.3.4(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react-dom@18.3.1(react@18.3.1))(react@18.3.1))(@types/react@18.3.18)(react@18.3.1) + version: 7.3.11(@mui/material@7.3.11(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react-dom@18.3.1(react@18.3.1))(react@18.3.1))(@types/react@18.3.30)(react@18.3.1) '@mui/material': specifier: ^7.2.0 - version: 7.3.4(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react-dom@18.3.1(react@18.3.1))(react@18.3.1) + version: 7.3.11(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react-dom@18.3.1(react@18.3.1))(react@18.3.1) just-debounce-it: specifier: ^3.1.1 version: 3.2.0 @@ -146,22 +210,22 @@ importers: devDependencies: '@types/node': specifier: ^24.3.0 - version: 24.3.0 + version: 24.12.4 '@types/react': specifier: ^18.3.10 - version: 18.3.18 + version: 18.3.30 '@types/react-dom': specifier: ^18.2.18 - version: 18.3.5(@types/react@18.3.18) + version: 18.3.7(@types/react@18.3.30) '@vitejs/plugin-react': specifier: ^4.3.4 - version: 4.3.4(vite@6.2.7(@types/node@24.3.0)(yaml@2.8.2)) + version: 4.7.0(vite@6.4.3(@types/node@24.12.4)(yaml@2.9.0)) typescript: specifier: ^5.8.2 - version: 5.8.2 + version: 5.9.3 vite: specifier: ^6.2.7 - version: 6.2.7(@types/node@24.3.0)(yaml@2.8.2) + version: 6.4.3(@types/node@24.12.4)(yaml@2.9.0) viewer: dependencies: @@ -170,49 +234,52 @@ importers: version: 9.0.41 '@deck.gl/geo-layers': specifier: ~9.0.0 - version: 9.0.41(@deck.gl/core@9.0.41)(@deck.gl/extensions@9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/mesh-layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) + version: 9.0.41(@deck.gl/core@9.0.41)(@deck.gl/extensions@9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/mesh-layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) '@deck.gl/layers': specifier: ~9.0.0 - version: 9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) + version: 9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) '@emotion/react': specifier: ^11.14.0 - version: 11.14.0(@types/react@18.3.18)(react@18.3.1) + version: 11.14.0(@types/react@18.3.30)(react@18.3.1) '@emotion/styled': specifier: ^11.14.1 - version: 11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1) + version: 11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1) '@hms-dbmi/viv': specifier: ~0.17.2 - version: 0.17.2(@deck.gl/core@9.0.41)(@deck.gl/geo-layers@9.0.41(@deck.gl/core@9.0.41)(@deck.gl/extensions@9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/mesh-layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/react@9.0.41(@deck.gl/core@9.0.41)(react-dom@18.3.1(react@18.3.1))(react@18.3.1))(@luma.gl/constants@9.0.28)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28))(@luma.gl/shadertools@9.0.28(@luma.gl/core@9.0.28))(@luma.gl/webgl@9.0.28(@luma.gl/core@9.0.28))(react@18.3.1) + version: 0.17.3(@deck.gl/core@9.0.41)(@deck.gl/geo-layers@9.0.41(@deck.gl/core@9.0.41)(@deck.gl/extensions@9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/mesh-layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/react@9.0.41(@deck.gl/core@9.0.41)(react-dom@18.3.1(react@18.3.1))(react@18.3.1))(@luma.gl/constants@9.0.28)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28))(@luma.gl/shadertools@9.0.28(@luma.gl/core@9.0.28))(@luma.gl/webgl@9.0.28(@luma.gl/core@9.0.28))(react@18.3.1) '@mui/icons-material': specifier: ^7.2.0 - version: 7.3.4(@mui/material@7.3.4(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react-dom@18.3.1(react@18.3.1))(react@18.3.1))(@types/react@18.3.18)(react@18.3.1) + version: 7.3.11(@mui/material@7.3.11(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react-dom@18.3.1(react@18.3.1))(react@18.3.1))(@types/react@18.3.30)(react@18.3.1) '@mui/material': specifier: ^7.2.0 - version: 7.3.4(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react-dom@18.3.1(react@18.3.1))(react@18.3.1) + version: 7.3.11(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react-dom@18.3.1(react@18.3.1))(react@18.3.1) + '@vivjs/loaders': + specifier: 0.17.2 + version: 0.17.2(patch_hash=auxsjwuajoz3k5rha2oxpwrlfm) '@vivjs/types': specifier: ~0.17.0 - version: 0.17.2 + version: 0.17.3 '@zarrita/storage': specifier: 0.1.4 version: 0.1.4 deck.gl: specifier: ~9.0.0 - version: 9.0.41(@arcgis/core@4.32.8(@lit/context@1.1.6))(react-dom@18.3.1(react@18.3.1))(react@18.3.1) + version: 9.0.41(@arcgis/core@4.34.8)(react-dom@18.3.1(react@18.3.1))(react@18.3.1) jotai: specifier: ^1.0.0 - version: 1.13.1(@babel/core@7.26.9)(@babel/template@7.26.9)(react@18.3.1) + version: 1.13.1(@babel/core@7.29.7)(@babel/template@7.29.7)(react@18.3.1) math.gl: specifier: ^4.1.0 version: 4.1.0 notistack: specifier: ^3.0.2 - version: 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'@deck.gl/arcgis@9.0.41(@arcgis/core@4.32.8(@lit/context@1.1.6))(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28))': + '@deck.gl/arcgis@9.0.41(@arcgis/core@4.34.8)(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28))': dependencies: - '@arcgis/core': 4.32.8(@lit/context@1.1.6) + '@arcgis/core': 4.34.8 '@deck.gl/core': 9.0.41 '@luma.gl/constants': 9.0.28 '@luma.gl/core': 9.0.28 '@luma.gl/engine': 9.0.28(@luma.gl/core@9.0.28) esri-loader: 3.7.0 - '@deck.gl/carto@9.0.41(m67uvbolj56khq5wgiv5vk2uge)': + '@deck.gl/carto@9.0.41(h3geslv24d6m33k2qxfmttsmcm)': dependencies: - '@deck.gl/aggregation-layers': 9.0.41(@deck.gl/core@9.0.41)(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) + '@deck.gl/aggregation-layers': 9.0.41(@deck.gl/core@9.0.41)(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) '@deck.gl/core': 9.0.41 '@deck.gl/extensions': 9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) - '@deck.gl/geo-layers': 9.0.41(@deck.gl/core@9.0.41)(@deck.gl/extensions@9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/mesh-layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) - '@deck.gl/layers': 9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) - '@loaders.gl/core': 4.3.3 - '@loaders.gl/gis': 4.3.3(@loaders.gl/core@4.3.3) - '@loaders.gl/loader-utils': 4.3.3(@loaders.gl/core@4.3.3) - '@loaders.gl/mvt': 4.3.3(@loaders.gl/core@4.3.3) - '@loaders.gl/schema': 4.3.3(@loaders.gl/core@4.3.3) - '@loaders.gl/tiles': 4.3.3(@loaders.gl/core@4.3.3) + '@deck.gl/geo-layers': 9.0.41(@deck.gl/core@9.0.41)(@deck.gl/extensions@9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/mesh-layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) + '@deck.gl/layers': 9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) + '@loaders.gl/core': 4.4.2 + '@loaders.gl/gis': 4.4.2(@loaders.gl/core@4.4.2) + '@loaders.gl/loader-utils': 4.4.2(@loaders.gl/core@4.4.2) + '@loaders.gl/mvt': 4.4.2(@loaders.gl/core@4.4.2) + '@loaders.gl/schema': 4.4.2 + '@loaders.gl/tiles': 4.4.2(@loaders.gl/core@4.4.2) '@luma.gl/core': 9.0.28 '@luma.gl/shadertools': 9.0.28(@luma.gl/core@9.0.28) '@math.gl/web-mercator': 4.1.0 - '@types/d3-array': 3.2.1 + '@types/d3-array': 3.2.2 '@types/d3-color': 1.4.5 '@types/d3-scale': 3.3.5 cartocolor: 5.0.2 d3-array: 3.2.4 d3-color: 3.1.0 - d3-format: 3.1.0 + d3-format: 3.1.2 d3-scale: 4.0.2 earcut: 2.2.4 - h3-js: 4.1.0 - moment-timezone: 0.5.47 + h3-js: 4.4.0 + moment-timezone: 0.5.48 pbf: 3.3.0 quadbin: 0.2.0 + transitivePeerDependencies: + - '@75lb/nature' '@deck.gl/core@9.0.41': dependencies: - '@loaders.gl/core': 4.3.3 - '@loaders.gl/images': 4.3.3(@loaders.gl/core@4.3.3) + '@loaders.gl/core': 4.4.2 + '@loaders.gl/images': 4.4.2(@loaders.gl/core@4.4.2) '@luma.gl/constants': 9.0.28 '@luma.gl/core': 9.0.28 '@luma.gl/engine': 9.0.28(@luma.gl/core@9.0.28) @@ -3949,12 +4678,14 @@ snapshots: '@math.gl/core': 4.1.0 '@math.gl/sun': 4.1.0 '@math.gl/web-mercator': 4.1.0 - '@probe.gl/env': 4.1.0 - '@probe.gl/log': 4.1.0 - '@probe.gl/stats': 4.1.0 + '@probe.gl/env': 4.1.1 + '@probe.gl/log': 4.1.1 + '@probe.gl/stats': 4.1.1 '@types/offscreencanvas': 2019.7.3 - gl-matrix: 3.4.3 + gl-matrix: 3.4.4 mjolnir.js: 2.7.3 + transitivePeerDependencies: + - '@75lb/nature' '@deck.gl/extensions@9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28))': dependencies: @@ -3965,31 +4696,33 @@ snapshots: '@luma.gl/shadertools': 9.0.28(@luma.gl/core@9.0.28) '@math.gl/core': 4.1.0 - '@deck.gl/geo-layers@9.0.41(@deck.gl/core@9.0.41)(@deck.gl/extensions@9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/mesh-layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28))': + '@deck.gl/geo-layers@9.0.41(@deck.gl/core@9.0.41)(@deck.gl/extensions@9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/mesh-layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28))': dependencies: '@deck.gl/core': 9.0.41 '@deck.gl/extensions': 9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) - '@deck.gl/layers': 9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) - '@deck.gl/mesh-layers': 9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) - '@loaders.gl/3d-tiles': 4.3.3(@loaders.gl/core@4.3.3) - '@loaders.gl/core': 4.3.3 - '@loaders.gl/gis': 4.3.3(@loaders.gl/core@4.3.3) - '@loaders.gl/loader-utils': 4.3.3(@loaders.gl/core@4.3.3) - '@loaders.gl/mvt': 4.3.3(@loaders.gl/core@4.3.3) - '@loaders.gl/schema': 4.3.3(@loaders.gl/core@4.3.3) - '@loaders.gl/terrain': 4.3.3(@loaders.gl/core@4.3.3) - '@loaders.gl/tiles': 4.3.3(@loaders.gl/core@4.3.3) - '@loaders.gl/wms': 4.3.3(@loaders.gl/core@4.3.3) + '@deck.gl/layers': 9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) + '@deck.gl/mesh-layers': 9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) + '@loaders.gl/3d-tiles': 4.4.2(@loaders.gl/core@4.4.2) + '@loaders.gl/core': 4.4.2 + '@loaders.gl/gis': 4.4.2(@loaders.gl/core@4.4.2) + '@loaders.gl/loader-utils': 4.4.2(@loaders.gl/core@4.4.2) + '@loaders.gl/mvt': 4.4.2(@loaders.gl/core@4.4.2) + '@loaders.gl/schema': 4.4.2 + '@loaders.gl/terrain': 4.4.2(@loaders.gl/core@4.4.2) + '@loaders.gl/tiles': 4.4.2(@loaders.gl/core@4.4.2) + '@loaders.gl/wms': 4.4.2(@loaders.gl/core@4.4.2) '@luma.gl/core': 9.0.28 '@luma.gl/engine': 9.0.28(@luma.gl/core@9.0.28) - '@luma.gl/gltf': 9.0.28(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) + '@luma.gl/gltf': 9.0.28(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) '@luma.gl/shadertools': 9.0.28(@luma.gl/core@9.0.28) '@math.gl/core': 4.1.0 '@math.gl/culling': 4.1.0 '@math.gl/web-mercator': 4.1.0 '@types/geojson': 7946.0.16 - h3-js: 4.1.0 + h3-js: 4.4.0 long: 3.2.0 + transitivePeerDependencies: + - '@75lb/nature' '@deck.gl/google-maps@9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)': dependencies: @@ -3997,26 +4730,28 @@ snapshots: '@luma.gl/constants': 9.0.28 '@luma.gl/core': 9.0.28 '@math.gl/core': 4.1.0 - '@types/google.maps': 3.58.1 + '@types/google.maps': 3.65.0 '@deck.gl/json@9.0.41(@deck.gl/core@9.0.41)': dependencies: '@deck.gl/core': 9.0.41 jsep: 0.3.5 - '@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28))': + '@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28))': dependencies: '@deck.gl/core': 9.0.41 - '@loaders.gl/core': 4.3.3 - '@loaders.gl/images': 4.3.3(@loaders.gl/core@4.3.3) - '@loaders.gl/schema': 4.3.3(@loaders.gl/core@4.3.3) + '@loaders.gl/core': 4.4.2 + '@loaders.gl/images': 4.4.2(@loaders.gl/core@4.4.2) + '@loaders.gl/schema': 4.4.2 '@luma.gl/core': 9.0.28 '@luma.gl/engine': 9.0.28(@luma.gl/core@9.0.28) - '@mapbox/tiny-sdf': 2.0.6 + '@mapbox/tiny-sdf': 2.2.0 '@math.gl/core': 4.1.0 '@math.gl/polygon': 4.1.0 '@math.gl/web-mercator': 4.1.0 earcut: 2.2.4 + transitivePeerDependencies: + - '@75lb/nature' '@deck.gl/mapbox@9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)': dependencies: @@ -4025,15 +4760,16 @@ snapshots: '@luma.gl/core': 9.0.28 '@math.gl/web-mercator': 4.1.0 - '@deck.gl/mesh-layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28))': + '@deck.gl/mesh-layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28))': dependencies: '@deck.gl/core': 9.0.41 - '@loaders.gl/gltf': 4.3.3(@loaders.gl/core@4.3.3) + '@loaders.gl/gltf': 4.4.2(@loaders.gl/core@4.4.2) '@luma.gl/core': 9.0.28 '@luma.gl/engine': 9.0.28(@luma.gl/core@9.0.28) - '@luma.gl/gltf': 9.0.28(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) + '@luma.gl/gltf': 9.0.28(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) '@luma.gl/shadertools': 9.0.28(@luma.gl/core@9.0.28) transitivePeerDependencies: + - '@75lb/nature' - '@loaders.gl/core' '@deck.gl/react@9.0.41(@deck.gl/core@9.0.41)(react-dom@18.3.1(react@18.3.1))(react@18.3.1)': @@ -4045,12 +4781,12 @@ snapshots: '@deck.gl/widgets@9.0.41(@deck.gl/core@9.0.41)': dependencies: '@deck.gl/core': 9.0.41 - preact: 10.26.4 + preact: 10.29.2 '@emotion/babel-plugin@11.13.5': dependencies: - '@babel/helper-module-imports': 7.25.9 - '@babel/runtime': 7.28.4 + '@babel/helper-module-imports': 7.29.7 + '@babel/runtime': 7.29.7 '@emotion/hash': 0.9.2 '@emotion/memoize': 0.9.0 '@emotion/serialize': 1.3.3 @@ -4079,9 +4815,9 @@ snapshots: '@emotion/memoize@0.9.0': {} - '@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1)': + '@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1)': dependencies: - '@babel/runtime': 7.28.4 + '@babel/runtime': 7.29.7 '@emotion/babel-plugin': 11.13.5 '@emotion/cache': 11.14.0 '@emotion/serialize': 1.3.3 @@ -4091,7 +4827,7 @@ snapshots: hoist-non-react-statics: 3.3.2 react: 18.3.1 optionalDependencies: - '@types/react': 18.3.18 + '@types/react': 18.3.30 transitivePeerDependencies: - supports-color @@ -4101,22 +4837,22 @@ snapshots: '@emotion/memoize': 0.9.0 '@emotion/unitless': 0.10.0 '@emotion/utils': 1.4.2 - csstype: 3.1.3 + csstype: 3.2.3 '@emotion/sheet@1.4.0': {} - '@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1)': + '@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1)': dependencies: - '@babel/runtime': 7.28.4 + '@babel/runtime': 7.29.7 '@emotion/babel-plugin': 11.13.5 '@emotion/is-prop-valid': 1.4.0 - '@emotion/react': 11.14.0(@types/react@18.3.18)(react@18.3.1) + '@emotion/react': 11.14.0(@types/react@18.3.30)(react@18.3.1) '@emotion/serialize': 1.3.3 '@emotion/use-insertion-effect-with-fallbacks': 1.2.0(react@18.3.1) '@emotion/utils': 1.4.2 react: 18.3.1 optionalDependencies: - '@types/react': 18.3.18 + '@types/react': 18.3.30 transitivePeerDependencies: - supports-color @@ -4130,99 +4866,102 @@ snapshots: '@emotion/weak-memoize@0.4.0': {} - '@esbuild/aix-ppc64@0.25.3': + '@esbuild/aix-ppc64@0.25.12': optional: true - '@esbuild/android-arm64@0.25.3': + '@esbuild/android-arm64@0.25.12': optional: true - '@esbuild/android-arm@0.25.3': + '@esbuild/android-arm@0.25.12': optional: true - '@esbuild/android-x64@0.25.3': + '@esbuild/android-x64@0.25.12': optional: true - '@esbuild/darwin-arm64@0.25.3': + '@esbuild/darwin-arm64@0.25.12': optional: true - '@esbuild/darwin-x64@0.25.3': + '@esbuild/darwin-x64@0.25.12': optional: true - '@esbuild/freebsd-arm64@0.25.3': + '@esbuild/freebsd-arm64@0.25.12': optional: true - '@esbuild/freebsd-x64@0.25.3': + '@esbuild/freebsd-x64@0.25.12': optional: true - '@esbuild/linux-arm64@0.25.3': + '@esbuild/linux-arm64@0.25.12': optional: true - '@esbuild/linux-arm@0.25.3': + '@esbuild/linux-arm@0.25.12': optional: true - '@esbuild/linux-ia32@0.25.3': + '@esbuild/linux-ia32@0.25.12': optional: true - '@esbuild/linux-loong64@0.25.3': + '@esbuild/linux-loong64@0.25.12': optional: true - '@esbuild/linux-mips64el@0.25.3': + '@esbuild/linux-mips64el@0.25.12': optional: true - '@esbuild/linux-ppc64@0.25.3': + '@esbuild/linux-ppc64@0.25.12': optional: true - '@esbuild/linux-riscv64@0.25.3': + '@esbuild/linux-riscv64@0.25.12': optional: true - '@esbuild/linux-s390x@0.25.3': + '@esbuild/linux-s390x@0.25.12': optional: true - '@esbuild/linux-x64@0.25.3': + '@esbuild/linux-x64@0.25.12': optional: true - '@esbuild/netbsd-arm64@0.25.3': + '@esbuild/netbsd-arm64@0.25.12': optional: true - '@esbuild/netbsd-x64@0.25.3': + '@esbuild/netbsd-x64@0.25.12': optional: true - '@esbuild/openbsd-arm64@0.25.3': + '@esbuild/openbsd-arm64@0.25.12': optional: true - '@esbuild/openbsd-x64@0.25.3': + '@esbuild/openbsd-x64@0.25.12': optional: true - '@esbuild/sunos-x64@0.25.3': + '@esbuild/openharmony-arm64@0.25.12': optional: true - '@esbuild/win32-arm64@0.25.3': + '@esbuild/sunos-x64@0.25.12': optional: true - '@esbuild/win32-ia32@0.25.3': + '@esbuild/win32-arm64@0.25.12': optional: true - '@esbuild/win32-x64@0.25.3': + '@esbuild/win32-ia32@0.25.12': + optional: true + + '@esbuild/win32-x64@0.25.12': optional: true '@esri/arcgis-html-sanitizer@4.1.0': dependencies: xss: 1.0.13 - '@esri/calcite-components@3.3.3(@lit/context@1.1.6)': + '@esri/calcite-components@3.3.3': dependencies: - '@arcgis/lumina': 4.34.9(@lit/context@1.1.6)(lit@3.3.2) + '@arcgis/lumina': 4.34.9(lit@3.3.3) '@arcgis/toolkit': 4.34.9 '@esri/calcite-ui-icons': 4.3.0 - '@floating-ui/dom': 1.7.5 - '@floating-ui/utils': 0.2.10 + '@floating-ui/dom': 1.7.6 + '@floating-ui/utils': 0.2.11 '@types/sortablejs': 1.15.9 color: 5.0.3 - composed-offset-position: 0.0.6(@floating-ui/utils@0.2.10) - es-toolkit: 1.44.0 + composed-offset-position: 0.0.6(@floating-ui/utils@0.2.11) + es-toolkit: 1.47.0 focus-trap: 7.8.0 interactjs: 1.10.27 - lit: 3.3.2 + lit: 3.3.3 sortablejs: 1.15.7 timezone-groups: 0.10.4 type-fest: 4.41.0 @@ -4231,28 +4970,52 @@ snapshots: '@esri/calcite-ui-icons@4.3.0': {} - '@fastify/busboy@2.1.1': {} + '@floating-ui/core@1.7.5': + dependencies: + '@floating-ui/utils': 0.2.11 + + '@floating-ui/dom@1.7.6': + dependencies: + '@floating-ui/core': 1.7.5 + '@floating-ui/utils': 0.2.11 + + '@floating-ui/utils@0.2.11': {} + + '@foliojs-fork/fontkit@1.9.2': + dependencies: + '@foliojs-fork/restructure': 2.0.2 + brotli: 1.3.3 + clone: 1.0.4 + deep-equal: 1.1.2 + dfa: 1.2.0 + tiny-inflate: 1.0.3 + unicode-properties: 1.4.1 + unicode-trie: 2.0.0 - '@floating-ui/core@1.7.4': + '@foliojs-fork/linebreak@1.1.2': dependencies: - '@floating-ui/utils': 0.2.10 + base64-js: 1.3.1 + unicode-trie: 2.0.0 - '@floating-ui/dom@1.7.5': + '@foliojs-fork/pdfkit@0.15.3': dependencies: - '@floating-ui/core': 1.7.4 - 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'@vivjs/constants': 0.17.2 - '@vivjs/extensions': 0.17.2(@deck.gl/core@9.0.41) - '@vivjs/layers': 0.17.2(@deck.gl/core@9.0.41)(@deck.gl/geo-layers@9.0.41(@deck.gl/core@9.0.41)(@deck.gl/extensions@9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/mesh-layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@luma.gl/constants@9.0.28)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28))(@luma.gl/shadertools@9.0.28(@luma.gl/core@9.0.28))(@luma.gl/webgl@9.0.28(@luma.gl/core@9.0.28)) - '@vivjs/loaders': 0.17.2(patch_hash=auxsjwuajoz3k5rha2oxpwrlfm) - 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'@75lb/nature' - '@loaders.gl/worker-utils@4.3.3(@loaders.gl/core@4.3.3)': + '@loaders.gl/worker-utils@4.4.2(@loaders.gl/core@4.4.2)': dependencies: - '@loaders.gl/core': 4.3.3 + '@loaders.gl/core': 4.4.2 - '@loaders.gl/xml@4.3.3(@loaders.gl/core@4.3.3)': + '@loaders.gl/xml@4.4.2(@loaders.gl/core@4.4.2)': dependencies: - '@loaders.gl/core': 4.3.3 - '@loaders.gl/loader-utils': 4.3.3(@loaders.gl/core@4.3.3) - '@loaders.gl/schema': 4.3.3(@loaders.gl/core@4.3.3) - fast-xml-parser: 4.5.3 + '@loaders.gl/core': 4.4.2 + '@loaders.gl/loader-utils': 4.4.2(@loaders.gl/core@4.4.2) + '@loaders.gl/schema': 4.4.2 + fast-xml-parser: 5.8.0 + transitivePeerDependencies: + - '@75lb/nature' - '@loaders.gl/zip@4.3.3(@loaders.gl/core@4.3.3)': + '@loaders.gl/zip@4.4.2(@loaders.gl/core@4.4.2)': dependencies: - '@loaders.gl/compression': 4.3.3(@loaders.gl/core@4.3.3) - '@loaders.gl/core': 4.3.3 - '@loaders.gl/crypto': 4.3.3(@loaders.gl/core@4.3.3) - '@loaders.gl/loader-utils': 4.3.3(@loaders.gl/core@4.3.3) + '@loaders.gl/compression': 4.4.2(@loaders.gl/core@4.4.2) + '@loaders.gl/core': 4.4.2 + '@loaders.gl/crypto': 4.4.2(@loaders.gl/core@4.4.2) + '@loaders.gl/loader-utils': 4.4.2(@loaders.gl/core@4.4.2) jszip: 3.10.1 md5: 2.3.0 + transitivePeerDependencies: + - '@75lb/nature' '@luma.gl/constants@9.0.28': {} '@luma.gl/core@9.0.28': dependencies: '@math.gl/types': 4.1.0 - '@probe.gl/env': 4.1.0 - '@probe.gl/log': 4.1.0 - '@probe.gl/stats': 4.1.0 + '@probe.gl/env': 4.1.1 + '@probe.gl/log': 4.1.1 + '@probe.gl/stats': 4.1.1 '@types/offscreencanvas': 2019.7.3 '@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)': @@ -4492,17 +5293,19 @@ snapshots: '@luma.gl/core': 9.0.28 '@luma.gl/shadertools': 9.0.28(@luma.gl/core@9.0.28) '@math.gl/core': 4.1.0 - '@probe.gl/log': 4.1.0 - '@probe.gl/stats': 4.1.0 + '@probe.gl/log': 4.1.1 + '@probe.gl/stats': 4.1.1 - '@luma.gl/gltf@9.0.28(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28))': + '@luma.gl/gltf@9.0.28(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28))': dependencies: - '@loaders.gl/core': 4.3.3 - '@loaders.gl/textures': 4.3.3(@loaders.gl/core@4.3.3) + '@loaders.gl/core': 4.4.2 + '@loaders.gl/textures': 4.4.2(@loaders.gl/core@4.4.2) '@luma.gl/core': 9.0.28 '@luma.gl/engine': 9.0.28(@luma.gl/core@9.0.28) '@luma.gl/shadertools': 9.0.28(@luma.gl/core@9.0.28) '@math.gl/core': 4.1.0 + transitivePeerDependencies: + - '@75lb/nature' '@luma.gl/shadertools@9.0.28(@luma.gl/core@9.0.28)': dependencies: @@ -4515,7 +5318,7 @@ snapshots: dependencies: '@luma.gl/constants': 9.0.28 '@luma.gl/core': 9.0.28 - '@probe.gl/env': 4.1.0 + '@probe.gl/env': 4.1.1 '@mapbox/martini@0.2.0': {} @@ -4525,7 +5328,7 @@ snapshots: dependencies: tilebelt: 1.0.1 - '@mapbox/tiny-sdf@2.0.6': {} + '@mapbox/tiny-sdf@2.2.0': {} '@mapbox/vector-tile@1.3.1': dependencies: @@ -4557,128 +5360,129 @@ snapshots: dependencies: '@math.gl/core': 4.1.0 - '@microsoft/api-extractor-model@7.32.2(@types/node@24.3.0)': + '@microsoft/api-extractor-model@7.33.8(@types/node@24.12.4)': dependencies: '@microsoft/tsdoc': 0.16.0 - '@microsoft/tsdoc-config': 0.18.0 - '@rushstack/node-core-library': 5.19.1(@types/node@24.3.0) + '@microsoft/tsdoc-config': 0.18.1 + '@rushstack/node-core-library': 5.23.1(@types/node@24.12.4) transitivePeerDependencies: - '@types/node' - '@microsoft/api-extractor@7.55.2(@types/node@24.3.0)': + '@microsoft/api-extractor@7.58.7(@types/node@24.12.4)': dependencies: - '@microsoft/api-extractor-model': 7.32.2(@types/node@24.3.0) + '@microsoft/api-extractor-model': 7.33.8(@types/node@24.12.4) '@microsoft/tsdoc': 0.16.0 - '@microsoft/tsdoc-config': 0.18.0 - '@rushstack/node-core-library': 5.19.1(@types/node@24.3.0) - '@rushstack/rig-package': 0.6.0 - '@rushstack/terminal': 0.19.5(@types/node@24.3.0) - '@rushstack/ts-command-line': 5.1.5(@types/node@24.3.0) - diff: 8.0.2 - lodash: 4.17.21 - minimatch: 10.0.3 - resolve: 1.22.10 - semver: 7.5.4 + '@microsoft/tsdoc-config': 0.18.1 + '@rushstack/node-core-library': 5.23.1(@types/node@24.12.4) + '@rushstack/rig-package': 0.7.3 + '@rushstack/terminal': 0.24.0(@types/node@24.12.4) + '@rushstack/ts-command-line': 5.3.9(@types/node@24.12.4) + diff: 8.0.4 + minimatch: 10.2.3 + resolve: 1.22.12 + semver: 7.7.4 source-map: 0.6.1 - typescript: 5.8.2 + typescript: 5.9.3 transitivePeerDependencies: - '@types/node' - '@microsoft/tsdoc-config@0.18.0': + '@microsoft/tsdoc-config@0.18.1': dependencies: '@microsoft/tsdoc': 0.16.0 - ajv: 8.12.0 + ajv: 8.18.0 jju: 1.4.0 - resolve: 1.22.10 + resolve: 1.22.12 '@microsoft/tsdoc@0.16.0': {} - '@mui/core-downloads-tracker@7.3.4': {} + '@mui/core-downloads-tracker@7.3.11': {} - '@mui/icons-material@7.3.4(@mui/material@7.3.4(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react-dom@18.3.1(react@18.3.1))(react@18.3.1))(@types/react@18.3.18)(react@18.3.1)': + '@mui/icons-material@7.3.11(@mui/material@7.3.11(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react-dom@18.3.1(react@18.3.1))(react@18.3.1))(@types/react@18.3.30)(react@18.3.1)': dependencies: - '@babel/runtime': 7.28.4 - '@mui/material': 7.3.4(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react-dom@18.3.1(react@18.3.1))(react@18.3.1) + '@babel/runtime': 7.29.7 + '@mui/material': 7.3.11(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react-dom@18.3.1(react@18.3.1))(react@18.3.1) react: 18.3.1 optionalDependencies: - '@types/react': 18.3.18 + '@types/react': 18.3.30 - '@mui/material@7.3.4(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react-dom@18.3.1(react@18.3.1))(react@18.3.1)': + '@mui/material@7.3.11(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react-dom@18.3.1(react@18.3.1))(react@18.3.1)': dependencies: - '@babel/runtime': 7.28.4 - '@mui/core-downloads-tracker': 7.3.4 - '@mui/system': 7.3.3(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1) - '@mui/types': 7.4.7(@types/react@18.3.18) - '@mui/utils': 7.3.3(@types/react@18.3.18)(react@18.3.1) + '@babel/runtime': 7.29.7 + '@mui/core-downloads-tracker': 7.3.11 + '@mui/system': 7.3.11(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1) + '@mui/types': 7.4.12(@types/react@18.3.30) + '@mui/utils': 7.3.11(@types/react@18.3.30)(react@18.3.1) '@popperjs/core': 2.11.8 - '@types/react-transition-group': 4.4.12(@types/react@18.3.18) + '@types/react-transition-group': 4.4.12(@types/react@18.3.30) clsx: 2.1.1 - csstype: 3.1.3 + csstype: 3.2.3 prop-types: 15.8.1 react: 18.3.1 react-dom: 18.3.1(react@18.3.1) - react-is: 19.2.0 + react-is: 19.2.7 react-transition-group: 4.4.5(react-dom@18.3.1(react@18.3.1))(react@18.3.1) optionalDependencies: - '@emotion/react': 11.14.0(@types/react@18.3.18)(react@18.3.1) - '@emotion/styled': 11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1) - '@types/react': 18.3.18 + '@emotion/react': 11.14.0(@types/react@18.3.30)(react@18.3.1) + '@emotion/styled': 11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1) + '@types/react': 18.3.30 - '@mui/private-theming@7.3.3(@types/react@18.3.18)(react@18.3.1)': + '@mui/private-theming@7.3.11(@types/react@18.3.30)(react@18.3.1)': dependencies: - '@babel/runtime': 7.28.4 - '@mui/utils': 7.3.3(@types/react@18.3.18)(react@18.3.1) + '@babel/runtime': 7.29.7 + '@mui/utils': 7.3.11(@types/react@18.3.30)(react@18.3.1) prop-types: 15.8.1 react: 18.3.1 optionalDependencies: - '@types/react': 18.3.18 + '@types/react': 18.3.30 - '@mui/styled-engine@7.3.3(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1))(react@18.3.1)': + '@mui/styled-engine@7.3.10(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1))(react@18.3.1)': dependencies: - '@babel/runtime': 7.28.4 + '@babel/runtime': 7.29.7 '@emotion/cache': 11.14.0 '@emotion/serialize': 1.3.3 '@emotion/sheet': 1.4.0 - csstype: 3.1.3 + csstype: 3.2.3 prop-types: 15.8.1 react: 18.3.1 optionalDependencies: - '@emotion/react': 11.14.0(@types/react@18.3.18)(react@18.3.1) - '@emotion/styled': 11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1) + '@emotion/react': 11.14.0(@types/react@18.3.30)(react@18.3.1) + '@emotion/styled': 11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1) - '@mui/system@7.3.3(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1)': + '@mui/system@7.3.11(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1)': dependencies: - '@babel/runtime': 7.28.4 - '@mui/private-theming': 7.3.3(@types/react@18.3.18)(react@18.3.1) - '@mui/styled-engine': 7.3.3(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1))(react@18.3.1) - '@mui/types': 7.4.7(@types/react@18.3.18) - '@mui/utils': 7.3.3(@types/react@18.3.18)(react@18.3.1) + '@babel/runtime': 7.29.7 + '@mui/private-theming': 7.3.11(@types/react@18.3.30)(react@18.3.1) + '@mui/styled-engine': 7.3.10(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1))(react@18.3.1) + '@mui/types': 7.4.12(@types/react@18.3.30) + '@mui/utils': 7.3.11(@types/react@18.3.30)(react@18.3.1) clsx: 2.1.1 - csstype: 3.1.3 + csstype: 3.2.3 prop-types: 15.8.1 react: 18.3.1 optionalDependencies: - '@emotion/react': 11.14.0(@types/react@18.3.18)(react@18.3.1) - '@emotion/styled': 11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1) - '@types/react': 18.3.18 + '@emotion/react': 11.14.0(@types/react@18.3.30)(react@18.3.1) + '@emotion/styled': 11.14.1(@emotion/react@11.14.0(@types/react@18.3.30)(react@18.3.1))(@types/react@18.3.30)(react@18.3.1) + '@types/react': 18.3.30 - '@mui/types@7.4.7(@types/react@18.3.18)': + '@mui/types@7.4.12(@types/react@18.3.30)': dependencies: - '@babel/runtime': 7.28.4 + '@babel/runtime': 7.29.7 optionalDependencies: - '@types/react': 18.3.18 + '@types/react': 18.3.30 - '@mui/utils@7.3.3(@types/react@18.3.18)(react@18.3.1)': + '@mui/utils@7.3.11(@types/react@18.3.30)(react@18.3.1)': dependencies: - '@babel/runtime': 7.28.4 - '@mui/types': 7.4.7(@types/react@18.3.18) + '@babel/runtime': 7.29.7 + '@mui/types': 7.4.12(@types/react@18.3.30) '@types/prop-types': 15.7.15 clsx: 2.1.1 prop-types: 15.8.1 react: 18.3.1 - react-is: 19.2.0 + react-is: 19.2.7 optionalDependencies: - '@types/react': 18.3.18 + '@types/react': 18.3.30 + + '@nodable/entities@2.1.1': {} '@octokit/auth-token@6.0.0': {} @@ -4686,20 +5490,20 @@ snapshots: dependencies: '@octokit/auth-token': 6.0.0 '@octokit/graphql': 9.0.3 - '@octokit/request': 10.0.6 - '@octokit/request-error': 7.0.2 + '@octokit/request': 10.0.10 + '@octokit/request-error': 7.1.0 '@octokit/types': 16.0.0 before-after-hook: 4.0.0 universal-user-agent: 7.0.3 - '@octokit/endpoint@11.0.2': + '@octokit/endpoint@11.0.3': dependencies: '@octokit/types': 16.0.0 universal-user-agent: 7.0.3 '@octokit/graphql@9.0.3': dependencies: - '@octokit/request': 10.0.6 + '@octokit/request': 10.0.10 '@octokit/types': 16.0.0 universal-user-agent: 7.0.3 @@ -4710,10 +5514,10 @@ snapshots: '@octokit/core': 7.0.6 '@octokit/types': 16.0.0 - '@octokit/plugin-retry@8.0.3(@octokit/core@7.0.6)': + '@octokit/plugin-retry@8.1.0(@octokit/core@7.0.6)': dependencies: '@octokit/core': 7.0.6 - '@octokit/request-error': 7.0.2 + '@octokit/request-error': 7.1.0 '@octokit/types': 16.0.0 bottleneck: 2.19.5 @@ -4723,16 +5527,17 @@ snapshots: '@octokit/types': 16.0.0 bottleneck: 2.19.5 - 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'@deck.gl/geo-layers': 9.0.41(@deck.gl/core@9.0.41)(@deck.gl/extensions@9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/mesh-layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) - '@deck.gl/layers': 9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) + '@deck.gl/geo-layers': 9.0.41(@deck.gl/core@9.0.41)(@deck.gl/extensions@9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/mesh-layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) + '@deck.gl/layers': 9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) '@luma.gl/constants': 9.0.28 '@luma.gl/core': 9.0.28 '@luma.gl/engine': 9.0.28(@luma.gl/core@9.0.28) @@ -5304,10 +6330,10 @@ snapshots: '@luma.gl/webgl': 9.0.28(@luma.gl/core@9.0.28) '@math.gl/core': 4.1.0 '@math.gl/culling': 4.1.0 - '@vivjs/constants': 0.17.2 - '@vivjs/extensions': 0.17.2(@deck.gl/core@9.0.41) - '@vivjs/loaders': 0.17.2(patch_hash=auxsjwuajoz3k5rha2oxpwrlfm) - '@vivjs/types': 0.17.2 + '@vivjs/constants': 0.17.3 + '@vivjs/extensions': 0.17.3(@deck.gl/core@9.0.41) + '@vivjs/loaders': 0.17.3 + '@vivjs/types': 0.17.3 '@vivjs/loaders@0.17.2(patch_hash=auxsjwuajoz3k5rha2oxpwrlfm)': dependencies: @@ -5316,19 +6342,33 @@ snapshots: lzw-tiff-decoder: 0.1.1 quickselect: 2.0.0 zarr: 0.6.3 - zod: 3.24.2 + zod: 3.25.76 + + '@vivjs/loaders@0.17.3': + dependencies: + '@vivjs/types': 0.17.3 + geotiff: 2.1.3 + lzw-tiff-decoder: 0.1.1 + quickselect: 2.0.0 + zarr: 0.6.3 + zod: 3.25.76 '@vivjs/types@0.17.2': dependencies: '@vivjs/constants': 0.17.2 math.gl: 4.1.0 - '@vivjs/viewers@0.17.2(@deck.gl/core@9.0.41)(@deck.gl/geo-layers@9.0.41(@deck.gl/core@9.0.41)(@deck.gl/extensions@9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/mesh-layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/react@9.0.41(@deck.gl/core@9.0.41)(react-dom@18.3.1(react@18.3.1))(react@18.3.1))(@luma.gl/constants@9.0.28)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28))(@luma.gl/shadertools@9.0.28(@luma.gl/core@9.0.28))(@luma.gl/webgl@9.0.28(@luma.gl/core@9.0.28))(react@18.3.1)': + '@vivjs/types@0.17.3': + dependencies: + '@vivjs/constants': 0.17.3 + math.gl: 4.1.0 + + '@vivjs/viewers@0.17.3(@deck.gl/core@9.0.41)(@deck.gl/geo-layers@9.0.41(@deck.gl/core@9.0.41)(@deck.gl/extensions@9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/mesh-layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/react@9.0.41(@deck.gl/core@9.0.41)(react-dom@18.3.1(react@18.3.1))(react@18.3.1))(@luma.gl/constants@9.0.28)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28))(@luma.gl/shadertools@9.0.28(@luma.gl/core@9.0.28))(@luma.gl/webgl@9.0.28(@luma.gl/core@9.0.28))(react@18.3.1)': dependencies: '@deck.gl/react': 9.0.41(@deck.gl/core@9.0.41)(react-dom@18.3.1(react@18.3.1))(react@18.3.1) - '@vivjs/constants': 0.17.2 - '@vivjs/extensions': 0.17.2(@deck.gl/core@9.0.41) - '@vivjs/views': 0.17.2(@deck.gl/core@9.0.41)(@deck.gl/geo-layers@9.0.41(@deck.gl/core@9.0.41)(@deck.gl/extensions@9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/mesh-layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@luma.gl/constants@9.0.28)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28))(@luma.gl/shadertools@9.0.28(@luma.gl/core@9.0.28))(@luma.gl/webgl@9.0.28(@luma.gl/core@9.0.28)) + '@vivjs/constants': 0.17.3 + '@vivjs/extensions': 0.17.3(@deck.gl/core@9.0.41) + '@vivjs/views': 0.17.3(@deck.gl/core@9.0.41)(@deck.gl/geo-layers@9.0.41(@deck.gl/core@9.0.41)(@deck.gl/extensions@9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/mesh-layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@luma.gl/constants@9.0.28)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28))(@luma.gl/shadertools@9.0.28(@luma.gl/core@9.0.28))(@luma.gl/webgl@9.0.28(@luma.gl/core@9.0.28)) fast-deep-equal: 3.1.3 react: 18.3.1 transitivePeerDependencies: @@ -5341,13 +6381,13 @@ snapshots: - '@luma.gl/shadertools' - '@luma.gl/webgl' - '@vivjs/views@0.17.2(@deck.gl/core@9.0.41)(@deck.gl/geo-layers@9.0.41(@deck.gl/core@9.0.41)(@deck.gl/extensions@9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/mesh-layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@luma.gl/constants@9.0.28)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28))(@luma.gl/shadertools@9.0.28(@luma.gl/core@9.0.28))(@luma.gl/webgl@9.0.28(@luma.gl/core@9.0.28))': + '@vivjs/views@0.17.3(@deck.gl/core@9.0.41)(@deck.gl/geo-layers@9.0.41(@deck.gl/core@9.0.41)(@deck.gl/extensions@9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/mesh-layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@deck.gl/layers@9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)))(@luma.gl/constants@9.0.28)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28))(@luma.gl/shadertools@9.0.28(@luma.gl/core@9.0.28))(@luma.gl/webgl@9.0.28(@luma.gl/core@9.0.28))': dependencies: '@deck.gl/core': 9.0.41 - 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'@deck.gl/geo-layers' @@ -5357,50 +6397,50 @@ snapshots: - '@luma.gl/shadertools' - '@luma.gl/webgl' - '@volar/language-core@2.4.26': + '@volar/language-core@2.4.28': dependencies: - '@volar/source-map': 2.4.26 + '@volar/source-map': 2.4.28 - '@volar/source-map@2.4.26': {} + '@volar/source-map@2.4.28': {} - '@volar/typescript@2.4.26': + '@volar/typescript@2.4.28': dependencies: - '@volar/language-core': 2.4.26 + '@volar/language-core': 2.4.28 path-browserify: 1.0.1 vscode-uri: 3.1.0 - '@vue/compiler-core@3.5.25': + '@vue/compiler-core@3.5.35': dependencies: - '@babel/parser': 7.28.5 - '@vue/shared': 3.5.25 - entities: 4.5.0 + '@babel/parser': 7.29.7 + '@vue/shared': 3.5.35 + entities: 7.0.1 estree-walker: 2.0.2 source-map-js: 1.2.1 - '@vue/compiler-dom@3.5.25': + '@vue/compiler-dom@3.5.35': dependencies: - '@vue/compiler-core': 3.5.25 - '@vue/shared': 3.5.25 + '@vue/compiler-core': 3.5.35 + '@vue/shared': 3.5.35 '@vue/compiler-vue2@2.7.16': dependencies: de-indent: 1.0.2 he: 1.2.0 - '@vue/language-core@2.2.0(typescript@5.8.2)': + '@vue/language-core@2.2.0(typescript@5.9.3)': dependencies: - '@volar/language-core': 2.4.26 - '@vue/compiler-dom': 3.5.25 + '@volar/language-core': 2.4.28 + '@vue/compiler-dom': 3.5.35 '@vue/compiler-vue2': 2.7.16 - '@vue/shared': 3.5.25 + '@vue/shared': 3.5.35 alien-signals: 0.4.14 - minimatch: 9.0.5 + minimatch: 9.0.9 muggle-string: 0.4.1 path-browserify: 1.0.1 optionalDependencies: - typescript: 5.8.2 + typescript: 5.9.3 - '@vue/shared@3.5.25': {} + '@vue/shared@3.5.35': {} '@webcomponents/shadycss@1.11.2': {} @@ -5409,11 +6449,11 @@ snapshots: reference-spec-reader: 0.2.0 unzipit: 1.4.3 - '@zip.js/zip.js@2.7.73': {} + '@zip.js/zip.js@2.8.26': {} - acorn@8.15.0: {} + acorn@8.16.0: {} - agent-base@7.1.4: {} + agent-base@9.0.0: {} aggregate-error@3.1.0: dependencies: @@ -5425,31 +6465,24 @@ snapshots: clean-stack: 5.3.0 indent-string: 5.0.0 - ajv-draft-04@1.0.0(ajv@8.13.0): + ajv-draft-04@1.0.0(ajv@8.18.0): optionalDependencies: - ajv: 8.13.0 + ajv: 8.18.0 - ajv-formats@3.0.1(ajv@8.13.0): + ajv-formats@3.0.1(ajv@8.18.0): optionalDependencies: - ajv: 8.13.0 - - ajv@8.12.0: - dependencies: - fast-deep-equal: 3.1.3 - json-schema-traverse: 1.0.0 - require-from-string: 2.0.2 - uri-js: 4.4.1 + ajv: 8.18.0 - ajv@8.13.0: + ajv@8.18.0: dependencies: fast-deep-equal: 3.1.3 + fast-uri: 3.1.2 json-schema-traverse: 1.0.0 require-from-string: 2.0.2 - uri-js: 4.4.1 alien-signals@0.4.14: {} - ansi-escapes@7.2.0: + ansi-escapes@7.3.0: dependencies: environment: 1.1.0 @@ -5469,6 +6502,20 @@ snapshots: any-promise@1.3.0: {} + apache-arrow@21.1.0: + dependencies: + '@swc/helpers': 0.5.23 + '@types/command-line-args': 5.2.3 + '@types/command-line-usage': 5.0.4 + '@types/node': 24.12.4 + command-line-args: 6.0.2 + command-line-usage: 7.0.4 + flatbuffers: 25.9.23 + json-bignum: 0.0.3 + tslib: 2.8.1 + transitivePeerDependencies: + - '@75lb/nature' + argparse@1.0.10: dependencies: sprintf-js: 1.0.3 @@ -5477,6 +6524,8 @@ snapshots: argv-formatter@1.0.0: {} + array-back@6.2.3: {} + array-ify@1.0.0: {} assertion-error@2.0.1: {} @@ -5489,23 +6538,32 @@ snapshots: babel-plugin-macros@3.1.0: dependencies: - '@babel/runtime': 7.28.4 + '@babel/runtime': 7.29.7 cosmiconfig: 7.1.0 - resolve: 1.22.10 + resolve: 1.22.12 balanced-match@1.0.2: {} - base64-js@1.5.1: - optional: true + balanced-match@4.0.4: {} + + base64-js@1.3.1: {} + + base64-js@1.5.1: {} + + baseline-browser-mapping@2.10.33: {} before-after-hook@4.0.0: {} bottleneck@2.19.5: {} - brace-expansion@2.0.2: + brace-expansion@2.1.1: dependencies: balanced-match: 1.0.2 + brace-expansion@5.0.6: + dependencies: + balanced-match: 4.0.4 + braces@3.0.3: dependencies: fill-range: 7.1.1 @@ -5513,26 +6571,61 @@ snapshots: brotli@1.3.3: dependencies: base64-js: 1.5.1 - optional: true - browserslist@4.24.4: + browserify-zlib@0.2.0: + dependencies: + pako: 1.0.11 + + browserslist@4.28.2: dependencies: - caniuse-lite: 1.0.30001703 - electron-to-chromium: 1.5.114 - node-releases: 2.0.19 - update-browserslist-db: 1.1.3(browserslist@4.24.4) + baseline-browser-mapping: 2.10.33 + caniuse-lite: 1.0.30001793 + electron-to-chromium: 1.5.366 + node-releases: 2.0.47 + update-browserslist-db: 1.2.3(browserslist@4.28.2) buf-compare@1.0.1: {} + cac@6.7.14: {} + + call-bind-apply-helpers@1.0.2: + dependencies: + es-errors: 1.3.0 + function-bind: 1.1.2 + + call-bind@1.0.9: + dependencies: + call-bind-apply-helpers: 1.0.2 + es-define-property: 1.0.1 + get-intrinsic: 1.3.0 + set-function-length: 1.2.2 + + call-bound@1.0.4: + dependencies: + call-bind-apply-helpers: 1.0.2 + get-intrinsic: 1.3.0 + callsites@3.1.0: {} - caniuse-lite@1.0.30001703: {} + caniuse-lite@1.0.30001793: {} cartocolor@5.0.2: dependencies: colorbrewer: 1.5.6 - chai@6.2.1: {} + chai@5.3.3: + dependencies: + assertion-error: 2.0.1 + check-error: 2.1.3 + deep-eql: 5.0.2 + loupe: 3.2.1 + pathval: 2.0.1 + + chai@6.2.2: {} + + chalk-template@0.4.0: + dependencies: + chalk: 4.1.2 chalk@2.4.2: dependencies: @@ -5551,6 +6644,8 @@ snapshots: charenc@0.0.2: {} + check-error@2.1.3: {} + clean-stack@2.2.0: {} clean-stack@5.3.0: @@ -5581,9 +6676,11 @@ snapshots: cliui@9.0.1: dependencies: string-width: 7.2.0 - strip-ansi: 7.1.2 + strip-ansi: 7.2.0 wrap-ansi: 9.0.2 + clone@1.0.4: {} + clsx@1.2.1: {} clsx@2.1.1: {} @@ -5617,8 +6714,24 @@ snapshots: colorbrewer@1.5.6: {} + command-line-args@6.0.2: + dependencies: + array-back: 6.2.3 + find-replace: 5.0.2 + lodash.camelcase: 4.3.0 + typical: 7.3.0 + + command-line-usage@7.0.4: + dependencies: + array-back: 6.2.3 + chalk-template: 0.4.0 + table-layout: 4.1.1 + typical: 7.3.0 + commander@2.20.3: {} + commander@7.2.0: {} + compare-func@2.0.0: dependencies: array-ify: 1.0.0 @@ -5626,34 +6739,38 @@ snapshots: compare-versions@6.1.1: {} - composed-offset-position@0.0.6(@floating-ui/utils@0.2.10): + composed-offset-position@0.0.6(@floating-ui/utils@0.2.11): dependencies: - '@floating-ui/utils': 0.2.10 + '@floating-ui/utils': 0.2.11 confbox@0.1.8: {} - confbox@0.2.2: {} + confbox@0.2.4: {} config-chain@1.1.13: dependencies: ini: 1.3.8 proto-list: 1.2.4 - conventional-changelog-angular@8.1.0: + content-type@2.0.0: {} + + conventional-changelog-angular@8.3.1: dependencies: compare-func: 2.0.0 - conventional-changelog-writer@8.2.0: + conventional-changelog-writer@8.4.0: dependencies: + '@simple-libs/stream-utils': 1.2.0 conventional-commits-filter: 5.0.0 - handlebars: 4.7.8 + handlebars: 4.7.9 meow: 13.2.0 - semver: 7.7.3 + semver: 7.8.1 conventional-commits-filter@5.0.0: {} - conventional-commits-parser@6.2.1: + conventional-commits-parser@6.4.0: dependencies: + '@simple-libs/stream-utils': 1.2.0 meow: 13.2.0 convert-hrtime@5.0.0: {} @@ -5675,16 +6792,16 @@ snapshots: import-fresh: 3.3.1 parse-json: 5.2.0 path-type: 4.0.0 - yaml: 1.10.2 + yaml: 1.10.3 - cosmiconfig@9.0.0(typescript@5.8.2): + cosmiconfig@9.0.1(typescript@5.9.3): dependencies: env-paths: 2.2.1 import-fresh: 3.3.1 - js-yaml: 4.1.0 + js-yaml: 4.2.0 parse-json: 5.2.0 optionalDependencies: - typescript: 5.8.2 + typescript: 5.9.3 cross-spawn@7.0.6: dependencies: @@ -5694,36 +6811,129 @@ snapshots: crypt@0.0.2: {} + crypto-js@4.2.0: {} + crypto-random-string@4.0.0: dependencies: type-fest: 1.4.0 cssfilter@0.0.10: {} - csstype@3.1.3: {} + csstype@3.2.3: {} + + d3-array@2.12.1: + dependencies: + internmap: 1.0.1 d3-array@3.2.4: dependencies: internmap: 2.0.3 + d3-axis@3.0.0: {} + + d3-brush@3.0.0: + dependencies: + d3-dispatch: 3.0.1 + d3-drag: 3.0.0 + d3-interpolate: 3.0.1 + d3-selection: 3.0.0 + d3-transition: 3.0.1(d3-selection@3.0.0) + + d3-chord@3.0.1: + dependencies: + d3-path: 3.1.0 + d3-color@3.1.0: {} - d3-format@3.1.0: {} + d3-contour@4.0.2: + dependencies: + d3-array: 3.2.4 + + d3-delaunay@6.0.4: + dependencies: + delaunator: 5.1.0 + + d3-dispatch@2.0.0: {} + + d3-dispatch@3.0.1: {} + + d3-drag@3.0.0: + dependencies: + d3-dispatch: 3.0.1 + d3-selection: 3.0.0 + + d3-dsv@3.0.1: + dependencies: + commander: 7.2.0 + iconv-lite: 0.6.3 + rw: 1.3.3 + + d3-ease@3.0.1: {} + + d3-fetch@3.0.1: + dependencies: + d3-dsv: 3.0.1 + + d3-force@3.0.0: + dependencies: + d3-dispatch: 3.0.1 + d3-quadtree: 3.0.1 + d3-timer: 3.0.1 + + d3-format@3.1.2: {} + + d3-geo@3.1.1: + dependencies: + d3-array: 3.2.4 d3-hexbin@0.2.2: {} + d3-hierarchy@3.1.2: {} + d3-interpolate@3.0.1: dependencies: d3-color: 3.1.0 + d3-path@1.0.9: {} + + d3-path@3.1.0: {} + + d3-polygon@2.0.0: {} + + d3-polygon@3.0.1: {} + + d3-quadtree@3.0.1: {} + + d3-random@3.0.1: {} + + d3-sankey@0.12.3: + dependencies: + d3-array: 2.12.1 + d3-shape: 1.3.7 + + d3-scale-chromatic@3.1.0: + dependencies: + d3-color: 3.1.0 + d3-interpolate: 3.0.1 + d3-scale@4.0.2: dependencies: d3-array: 3.2.4 - d3-format: 3.1.0 + d3-format: 3.1.2 d3-interpolate: 3.0.1 d3-time: 3.1.0 d3-time-format: 4.1.0 + d3-selection@3.0.0: {} + + d3-shape@1.3.7: + dependencies: + d3-path: 1.0.9 + + d3-shape@3.2.0: + dependencies: + d3-path: 3.1.0 + d3-time-format@4.1.0: dependencies: d3-time: 3.1.0 @@ -5732,34 +6942,117 @@ snapshots: dependencies: d3-array: 3.2.4 + d3-timer@2.0.0: {} + + d3-timer@3.0.1: {} + + d3-transition@3.0.1(d3-selection@3.0.0): + dependencies: + d3-color: 3.1.0 + d3-dispatch: 3.0.1 + d3-ease: 3.0.1 + d3-interpolate: 3.0.1 + d3-selection: 3.0.0 + d3-timer: 3.0.1 + + d3-voronoi-map@2.1.1: + dependencies: + d3-dispatch: 2.0.0 + d3-polygon: 2.0.0 + d3-timer: 2.0.0 + d3-weighted-voronoi: 1.1.3 + + d3-voronoi-treemap@1.1.2: + dependencies: + d3-voronoi-map: 2.1.1 + + d3-weighted-voronoi@1.1.3: + dependencies: + d3-array: 2.12.1 + d3-polygon: 2.0.0 + + d3-zoom@3.0.0: + dependencies: + d3-dispatch: 3.0.1 + d3-drag: 3.0.0 + d3-interpolate: 3.0.1 + d3-selection: 3.0.0 + d3-transition: 3.0.1(d3-selection@3.0.0) + + d3@7.9.0: + dependencies: + d3-array: 3.2.4 + d3-axis: 3.0.0 + d3-brush: 3.0.0 + d3-chord: 3.0.1 + d3-color: 3.1.0 + d3-contour: 4.0.2 + d3-delaunay: 6.0.4 + d3-dispatch: 3.0.1 + d3-drag: 3.0.0 + d3-dsv: 3.0.1 + d3-ease: 3.0.1 + d3-fetch: 3.0.1 + d3-force: 3.0.0 + d3-format: 3.1.2 + d3-geo: 3.1.1 + d3-hierarchy: 3.1.2 + d3-interpolate: 3.0.1 + d3-path: 3.1.0 + d3-polygon: 3.0.1 + d3-quadtree: 3.0.1 + d3-random: 3.0.1 + d3-scale: 4.0.2 + d3-scale-chromatic: 3.1.0 + d3-selection: 3.0.0 + d3-shape: 3.2.0 + d3-time: 3.1.0 + d3-time-format: 4.1.0 + d3-timer: 3.0.1 + d3-transition: 3.0.1(d3-selection@3.0.0) + d3-zoom: 3.0.0 + de-indent@1.0.2: {} - 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'@deck.gl/layers': 9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) + '@deck.gl/layers': 9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) '@deck.gl/mapbox': 9.0.41(@deck.gl/core@9.0.41)(@luma.gl/core@9.0.28) - '@deck.gl/mesh-layers': 9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.3.3)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) + '@deck.gl/mesh-layers': 9.0.41(@deck.gl/core@9.0.41)(@loaders.gl/core@4.4.2)(@luma.gl/core@9.0.28)(@luma.gl/engine@9.0.28(@luma.gl/core@9.0.28)) '@deck.gl/react': 9.0.41(@deck.gl/core@9.0.41)(react-dom@18.3.1(react@18.3.1))(react@18.3.1) '@deck.gl/widgets': 9.0.41(@deck.gl/core@9.0.41) - '@loaders.gl/core': 4.3.3 + '@loaders.gl/core': 4.4.2 '@luma.gl/core': 9.0.28 '@luma.gl/engine': 9.0.28(@luma.gl/core@9.0.28) optionalDependencies: - '@arcgis/core': 4.32.8(@lit/context@1.1.6) + '@arcgis/core': 4.34.8 react: 18.3.1 react-dom: 18.3.1(react@18.3.1) + transitivePeerDependencies: + - '@75lb/nature' + + deep-eql@5.0.2: {} + + deep-equal@1.1.2: + dependencies: + is-arguments: 1.2.0 + is-date-object: 1.1.0 + is-regex: 1.2.1 + object-is: 1.1.6 + object-keys: 1.1.1 + regexp.prototype.flags: 1.5.4 deep-extend@0.6.0: {} @@ -5767,7 +7060,25 @@ snapshots: dependencies: core-assert: 0.2.1 - diff@8.0.2: {} + define-data-property@1.1.4: + dependencies: + es-define-property: 1.0.1 + es-errors: 1.3.0 + gopd: 1.2.0 + + define-properties@1.2.1: + dependencies: + define-data-property: 1.1.4 + has-property-descriptors: 1.0.2 + object-keys: 1.1.1 + + delaunator@5.1.0: + dependencies: + robust-predicates: 3.0.3 + + dfa@1.2.0: {} + + diff@8.0.4: {} dir-glob@3.0.1: dependencies: @@ -5775,8 +7086,8 @@ snapshots: dom-helpers@5.2.1: dependencies: - '@babel/runtime': 7.28.4 - csstype: 3.1.3 + '@babel/runtime': 7.29.7 + csstype: 3.2.3 dot-prop@5.3.0: dependencies: @@ -5784,13 +7095,19 @@ snapshots: draco3d@1.5.7: {} + dunder-proto@1.0.1: + dependencies: + call-bind-apply-helpers: 1.0.2 + es-errors: 1.3.0 + gopd: 1.2.0 + duplexer2@0.1.4: dependencies: readable-stream: 2.3.8 earcut@2.2.4: {} - electron-to-chromium@1.5.114: {} + electron-to-chromium@1.5.366: {} emoji-regex@10.6.0: {} @@ -5798,7 +7115,7 @@ snapshots: emojilib@2.4.0: {} - entities@4.5.0: {} + entities@7.0.1: {} env-ci@11.2.0: dependencies: @@ -5813,37 +7130,48 @@ snapshots: dependencies: is-arrayish: 0.2.1 + es-define-property@1.0.1: {} + + es-errors@1.3.0: {} + es-module-lexer@1.7.0: {} - es-toolkit@1.44.0: {} + es-module-lexer@2.1.0: {} + + es-object-atoms@1.1.2: + dependencies: + es-errors: 1.3.0 + + es-toolkit@1.47.0: {} - esbuild@0.25.3: + esbuild@0.25.12: optionalDependencies: - '@esbuild/aix-ppc64': 0.25.3 - '@esbuild/android-arm': 0.25.3 - '@esbuild/android-arm64': 0.25.3 - '@esbuild/android-x64': 0.25.3 - '@esbuild/darwin-arm64': 0.25.3 - '@esbuild/darwin-x64': 0.25.3 - '@esbuild/freebsd-arm64': 0.25.3 - '@esbuild/freebsd-x64': 0.25.3 - '@esbuild/linux-arm': 0.25.3 - '@esbuild/linux-arm64': 0.25.3 - '@esbuild/linux-ia32': 0.25.3 - '@esbuild/linux-loong64': 0.25.3 - '@esbuild/linux-mips64el': 0.25.3 - '@esbuild/linux-ppc64': 0.25.3 - '@esbuild/linux-riscv64': 0.25.3 - '@esbuild/linux-s390x': 0.25.3 - '@esbuild/linux-x64': 0.25.3 - '@esbuild/netbsd-arm64': 0.25.3 - '@esbuild/netbsd-x64': 0.25.3 - '@esbuild/openbsd-arm64': 0.25.3 - '@esbuild/openbsd-x64': 0.25.3 - '@esbuild/sunos-x64': 0.25.3 - '@esbuild/win32-arm64': 0.25.3 - '@esbuild/win32-ia32': 0.25.3 - '@esbuild/win32-x64': 0.25.3 + '@esbuild/aix-ppc64': 0.25.12 + '@esbuild/android-arm': 0.25.12 + '@esbuild/android-arm64': 0.25.12 + '@esbuild/android-x64': 0.25.12 + '@esbuild/darwin-arm64': 0.25.12 + '@esbuild/darwin-x64': 0.25.12 + '@esbuild/freebsd-arm64': 0.25.12 + '@esbuild/freebsd-x64': 0.25.12 + '@esbuild/linux-arm': 0.25.12 + '@esbuild/linux-arm64': 0.25.12 + '@esbuild/linux-ia32': 0.25.12 + '@esbuild/linux-loong64': 0.25.12 + '@esbuild/linux-mips64el': 0.25.12 + '@esbuild/linux-ppc64': 0.25.12 + '@esbuild/linux-riscv64': 0.25.12 + '@esbuild/linux-s390x': 0.25.12 + '@esbuild/linux-x64': 0.25.12 + '@esbuild/netbsd-arm64': 0.25.12 + '@esbuild/netbsd-x64': 0.25.12 + '@esbuild/openbsd-arm64': 0.25.12 + '@esbuild/openbsd-x64': 0.25.12 + '@esbuild/openharmony-arm64': 0.25.12 + '@esbuild/sunos-x64': 0.25.12 + '@esbuild/win32-arm64': 0.25.12 + '@esbuild/win32-ia32': 0.25.12 + '@esbuild/win32-x64': 0.25.12 escalade@3.2.0: {} @@ -5859,9 +7187,9 @@ snapshots: estree-walker@3.0.3: dependencies: - '@types/estree': 1.0.7 + '@types/estree': 1.0.9 - eventemitter3@5.0.1: {} + eventemitter3@5.0.4: {} execa@5.1.1: dependencies: @@ -5887,7 +7215,7 @@ snapshots: signal-exit: 4.1.0 strip-final-newline: 3.0.0 - execa@9.6.0: + execa@9.6.1: dependencies: '@sindresorhus/merge-streams': 4.0.0 cross-spawn: 7.0.6 @@ -5906,21 +7234,30 @@ snapshots: exsolve@1.0.8: {} - fast-content-type-parse@3.0.0: {} - fast-deep-equal@3.1.3: {} - fast-xml-parser@4.5.3: + fast-uri@3.1.2: {} + + fast-xml-builder@1.2.0: + dependencies: + path-expression-matcher: 1.5.0 + xml-naming: 0.1.0 + + fast-xml-parser@5.8.0: dependencies: - strnum: 1.1.2 + '@nodable/entities': 2.1.1 + fast-xml-builder: 1.2.0 + path-expression-matcher: 1.5.0 + strnum: 2.3.0 + xml-naming: 0.1.0 - fdir@6.5.0(picomatch@4.0.3): + fdir@6.5.0(picomatch@4.0.4): optionalDependencies: - picomatch: 4.0.3 + picomatch: 4.0.4 fflate@0.7.4: {} - fflate@0.8.2: {} + fflate@0.8.3: {} figures@2.0.0: dependencies: @@ -5934,6 +7271,8 @@ snapshots: dependencies: to-regex-range: 5.0.1 + find-replace@5.0.2: {} + find-root@1.1.0: {} find-up-simple@1.0.1: {} @@ -5947,19 +7286,18 @@ snapshots: semver-regex: 4.0.5 super-regex: 1.1.0 + flatbuffers@25.9.23: {} + + flatpickr@4.6.13: {} + focus-trap@7.8.0: dependencies: tabbable: 6.4.0 - from2@2.3.0: - dependencies: - inherits: 2.0.4 - readable-stream: 2.3.8 - - fs-extra@11.3.2: + fs-extra@11.3.5: dependencies: graceful-fs: 4.2.11 - jsonfile: 6.2.0 + jsonfile: 6.2.1 universalify: 2.0.1 fsevents@2.3.3: @@ -5969,26 +7307,44 @@ snapshots: function-timeout@1.0.2: {} + functions-have-names@1.2.3: {} + gensync@1.0.0-beta.2: {} geotiff@2.1.3: dependencies: - '@petamoriken/float16': 3.9.2 + '@petamoriken/float16': 3.9.3 lerc: 3.0.0 pako: 2.1.0 - parse-headers: 2.0.5 + parse-headers: 2.0.6 quick-lru: 6.1.2 web-worker: 1.5.0 - xml-utils: 1.10.1 + xml-utils: 1.10.2 zstddec: 0.1.0 get-caller-file@2.0.5: {} - get-east-asian-width@1.4.0: {} + get-east-asian-width@1.6.0: {} - get-stream@6.0.1: {} + get-intrinsic@1.3.0: + dependencies: + call-bind-apply-helpers: 1.0.2 + es-define-property: 1.0.1 + es-errors: 1.3.0 + es-object-atoms: 1.1.2 + function-bind: 1.1.2 + get-proto: 1.0.1 + gopd: 1.2.0 + has-symbols: 1.1.0 + hasown: 2.0.4 + math-intrinsics: 1.1.0 - get-stream@7.0.1: {} + get-proto@1.0.1: + dependencies: + dunder-proto: 1.0.1 + es-object-atoms: 1.1.2 + + get-stream@6.0.1: {} get-stream@8.0.1: {} @@ -6006,23 +7362,23 @@ snapshots: through2: 2.0.5 traverse: 0.6.8 - gl-matrix@3.4.3: {} + gl-matrix@3.4.4: {} - globals@11.12.0: {} - - goober@2.1.18(csstype@3.1.3): + goober@2.1.19(csstype@3.2.3): dependencies: - csstype: 3.1.3 + csstype: 3.2.3 + + gopd@1.2.0: {} graceful-fs@4.2.10: {} graceful-fs@4.2.11: {} - h3-js@4.1.0: {} + h3-js@4.4.0: {} hammerjs@2.0.8: {} - handlebars@4.7.8: + handlebars@4.7.9: dependencies: minimist: 1.2.8 neo-async: 2.6.2 @@ -6035,7 +7391,17 @@ snapshots: has-flag@4.0.0: {} - hasown@2.0.2: + has-property-descriptors@1.0.2: + dependencies: + es-define-property: 1.0.1 + + has-symbols@1.1.0: {} + + has-tostringtag@1.0.2: + dependencies: + has-symbols: 1.1.0 + + hasown@2.0.4: dependencies: function-bind: 1.1.2 @@ -6053,23 +7419,23 @@ snapshots: dependencies: lru-cache: 10.4.3 - hosted-git-info@9.0.2: + hosted-git-info@9.0.3: dependencies: - lru-cache: 11.2.2 + lru-cache: 11.5.1 html-escaper@2.0.2: {} - http-proxy-agent@7.0.2: + http-proxy-agent@9.0.0: dependencies: - agent-base: 7.1.4 - debug: 4.4.0 + agent-base: 9.0.0 + debug: 4.4.3 transitivePeerDependencies: - supports-color - https-proxy-agent@7.0.6: + https-proxy-agent@9.0.0: dependencies: - agent-base: 7.1.4 - debug: 4.4.0 + agent-base: 9.0.0 + debug: 4.4.3 transitivePeerDependencies: - supports-color @@ -6079,6 +7445,16 @@ snapshots: human-signals@8.0.1: {} + hyparquet@1.26.0: {} + + iconv-lite@0.6.3: + dependencies: + safer-buffer: 2.1.2 + + iconv-lite@0.7.2: + dependencies: + safer-buffer: 2.1.2 + ieee754@1.2.1: {} image-size@0.7.5: {} @@ -6092,7 +7468,7 @@ snapshots: import-from-esm@2.0.0: dependencies: - debug: 4.4.0 + debug: 4.4.3 import-meta-resolve: 4.2.0 transitivePeerDependencies: - supports-color @@ -6115,20 +7491,27 @@ snapshots: dependencies: '@interactjs/types': 1.10.27 + internmap@1.0.1: {} + internmap@2.0.3: {} - into-stream@7.0.0: + is-arguments@1.2.0: dependencies: - from2: 2.3.0 - p-is-promise: 3.0.0 + call-bound: 1.0.4 + has-tostringtag: 1.0.2 is-arrayish@0.2.1: {} is-buffer@1.1.6: {} - is-core-module@2.16.1: + is-core-module@2.16.2: + dependencies: + hasown: 2.0.4 + + is-date-object@1.1.0: dependencies: - hasown: 2.0.2 + call-bound: 1.0.4 + has-tostringtag: 1.0.2 is-error@2.2.2: {} @@ -6140,6 +7523,13 @@ snapshots: is-plain-obj@4.1.0: {} + is-regex@1.2.1: + dependencies: + call-bound: 1.0.4 + gopd: 1.2.0 + has-tostringtag: 1.0.2 + hasown: 2.0.4 + is-stream@2.0.1: {} is-stream@3.0.0: {} @@ -6152,7 +7542,7 @@ snapshots: isexe@2.0.0: {} - issue-parser@7.0.1: + issue-parser@7.0.2: dependencies: lodash.capitalize: 4.2.1 lodash.escaperegexp: 4.1.2 @@ -6170,8 +7560,8 @@ snapshots: istanbul-lib-source-maps@5.0.6: dependencies: - '@jridgewell/trace-mapping': 0.3.25 - debug: 4.4.0 + '@jridgewell/trace-mapping': 0.3.31 + debug: 4.4.3 istanbul-lib-coverage: 3.2.2 transitivePeerDependencies: - supports-color @@ -6185,18 +7575,22 @@ snapshots: jju@1.4.0: {} - jotai@1.13.1(@babel/core@7.26.9)(@babel/template@7.26.9)(react@18.3.1): + jotai@1.13.1(@babel/core@7.29.7)(@babel/template@7.29.7)(react@18.3.1): dependencies: react: 18.3.1 optionalDependencies: - '@babel/core': 7.26.9 - '@babel/template': 7.26.9 + '@babel/core': 7.29.7 + '@babel/template': 7.29.7 + + jpeg-exif@1.1.4: {} js-tokens@10.0.0: {} js-tokens@4.0.0: {} - js-yaml@4.1.0: + js-tokens@9.0.1: {} + + js-yaml@4.2.0: dependencies: argparse: 2.0.1 @@ -6204,15 +7598,19 @@ snapshots: jsesc@3.1.0: {} + json-bignum@0.0.3: {} + json-parse-better-errors@1.0.2: {} json-parse-even-better-errors@2.3.1: {} json-schema-traverse@1.0.0: {} + json-with-bigint@3.5.8: {} + json5@2.2.3: {} - jsonfile@6.2.0: + jsonfile@6.2.1: dependencies: universalify: 2.0.1 optionalDependencies: @@ -6241,19 +7639,19 @@ snapshots: lit-element@4.2.2: dependencies: - '@lit-labs/ssr-dom-shim': 1.5.1 + '@lit-labs/ssr-dom-shim': 1.6.0 '@lit/reactive-element': 2.1.2 - lit-html: 3.3.2 + lit-html: 3.3.3 - lit-html@3.3.2: + lit-html@3.3.3: dependencies: '@types/trusted-types': 2.0.7 - lit@3.3.2: + lit@3.3.3: dependencies: '@lit/reactive-element': 2.1.2 lit-element: 4.2.2 - lit-html: 3.3.2 + lit-html: 3.3.3 load-json-file@4.0.0: dependencies: @@ -6262,10 +7660,10 @@ snapshots: pify: 3.0.0 strip-bom: 3.0.0 - local-pkg@1.1.2: + local-pkg@1.2.1: dependencies: - mlly: 1.8.0 - pkg-types: 2.3.0 + mlly: 1.8.2 + pkg-types: 2.3.1 quansync: 0.2.11 locate-path@2.0.0: @@ -6273,7 +7671,9 @@ snapshots: p-locate: 2.0.0 path-exists: 3.0.0 - lodash-es@4.17.21: {} + lodash-es@4.18.1: {} + + lodash.camelcase@4.3.0: {} lodash.capitalize@4.2.1: {} @@ -6285,60 +7685,56 @@ snapshots: lodash.uniqby@4.7.0: {} - lodash@4.17.21: {} + lodash@4.18.1: {} long@3.2.0: {} - long@5.3.1: {} + long@5.3.2: {} loose-envify@1.4.0: dependencies: js-tokens: 4.0.0 + loupe@3.2.1: {} + lru-cache@10.4.3: {} - lru-cache@11.2.2: {} + lru-cache@11.5.1: {} lru-cache@5.1.1: dependencies: yallist: 3.1.1 - lru-cache@6.0.0: - dependencies: - yallist: 4.0.0 - - luxon@3.5.0: {} + luxon@3.7.2: {} lz4js@0.2.0: optional: true - lzo-wasm@0.0.4: {} - lzw-tiff-decoder@0.1.1: {} magic-string@0.30.21: dependencies: '@jridgewell/sourcemap-codec': 1.5.5 - magicast@0.5.2: + magicast@0.5.3: dependencies: - '@babel/parser': 7.29.0 - '@babel/types': 7.29.0 + '@babel/parser': 7.29.7 + '@babel/types': 7.29.7 source-map-js: 1.2.1 - make-asynchronous@1.0.1: + make-asynchronous@1.1.0: dependencies: p-event: 6.0.1 type-fest: 4.41.0 - web-worker: 1.2.0 + web-worker: 1.5.0 make-dir@4.0.0: dependencies: - semver: 7.7.3 + semver: 7.8.1 marked-terminal@7.3.0(marked@15.0.12): dependencies: - ansi-escapes: 7.2.0 + ansi-escapes: 7.3.0 ansi-regex: 6.2.2 chalk: 5.6.2 cli-highlight: 2.1.11 @@ -6349,6 +7745,12 @@ snapshots: marked@15.0.12: {} + marked@16.3.0: {} + + markerjs2@2.32.7: {} + + math-intrinsics@1.1.0: {} + math.gl@4.1.0: dependencies: '@math.gl/core': 4.1.0 @@ -6366,7 +7768,7 @@ snapshots: micromatch@4.0.8: dependencies: braces: 3.0.3 - picomatch: 2.3.1 + picomatch: 2.3.2 mime@4.1.0: {} @@ -6374,13 +7776,13 @@ snapshots: mimic-fn@4.0.0: {} - minimatch@10.0.3: + minimatch@10.2.3: dependencies: - '@isaacs/brace-expansion': 5.0.0 + brace-expansion: 5.0.6 - minimatch@9.0.5: + minimatch@9.0.9: dependencies: - brace-expansion: 2.0.2 + brace-expansion: 2.1.1 minimist@1.2.8: {} @@ -6389,14 +7791,14 @@ snapshots: '@types/hammerjs': 2.0.46 hammerjs: 2.0.8 - mlly@1.8.0: + mlly@1.8.2: dependencies: - acorn: 8.15.0 + acorn: 8.16.0 pathe: 2.0.3 pkg-types: 1.3.1 - ufo: 1.6.1 + ufo: 1.6.4 - moment-timezone@0.5.47: + moment-timezone@0.5.48: dependencies: moment: 2.30.1 @@ -6412,7 +7814,7 @@ snapshots: object-assign: 4.1.1 thenify-all: 1.6.0 - nanoid@3.3.11: {} + nanoid@3.3.12: {} neo-async@2.6.2: {} @@ -6425,26 +7827,26 @@ snapshots: emojilib: 2.4.0 skin-tone: 2.0.0 - node-releases@2.0.19: {} + node-releases@2.0.47: {} normalize-package-data@6.0.2: dependencies: hosted-git-info: 7.0.2 - semver: 7.7.3 + semver: 7.8.1 validate-npm-package-license: 3.0.4 normalize-package-data@8.0.0: dependencies: - hosted-git-info: 9.0.2 - semver: 7.7.3 + hosted-git-info: 9.0.3 + semver: 7.8.1 validate-npm-package-license: 3.0.4 - normalize-url@8.1.0: {} + normalize-url@9.0.1: {} - notistack@3.0.2(csstype@3.1.3)(react-dom@18.3.1(react@18.3.1))(react@18.3.1): + notistack@3.0.2(csstype@3.2.3)(react-dom@18.3.1(react@18.3.1))(react@18.3.1): dependencies: clsx: 1.2.1 - goober: 2.1.18(csstype@3.1.3) + goober: 2.1.19(csstype@3.2.3) react: 18.3.1 react-dom: 18.3.1(react@18.3.1) transitivePeerDependencies: @@ -6463,16 +7865,23 @@ snapshots: path-key: 4.0.0 unicorn-magic: 0.3.0 - npm@11.6.2: {} + npm@11.16.0: {} numcodecs@0.2.2: {} numcodecs@0.3.2: dependencies: - fflate: 0.8.2 + fflate: 0.8.3 object-assign@4.1.1: {} + object-is@1.1.6: + dependencies: + call-bind: 1.0.9 + define-properties: 1.2.1 + + object-keys@1.1.1: {} + obug@2.1.1: {} onetime@5.1.2: @@ -6491,9 +7900,7 @@ snapshots: p-filter@4.1.0: dependencies: - p-map: 7.0.3 - - p-is-promise@3.0.0: {} + p-map: 7.0.4 p-limit@1.3.0: dependencies: @@ -6503,11 +7910,11 @@ snapshots: dependencies: p-limit: 1.3.0 - p-map@7.0.3: {} + p-map@7.0.4: {} p-queue@7.4.1: dependencies: - eventemitter3: 5.0.1 + eventemitter3: 5.0.4 p-timeout: 5.1.0 p-reduce@2.1.0: {} @@ -6520,6 +7927,8 @@ snapshots: p-try@1.0.0: {} + pako@0.2.9: {} + pako@1.0.11: {} pako@2.1.0: {} @@ -6528,7 +7937,7 @@ snapshots: dependencies: callsites: 3.1.0 - parse-headers@2.0.5: {} + parse-headers@2.0.6: {} parse-json@4.0.0: dependencies: @@ -6537,14 +7946,14 @@ snapshots: parse-json@5.2.0: dependencies: - '@babel/code-frame': 7.26.2 + '@babel/code-frame': 7.29.7 error-ex: 1.3.4 json-parse-even-better-errors: 2.3.1 lines-and-columns: 1.2.4 parse-json@8.3.0: dependencies: - '@babel/code-frame': 7.26.2 + '@babel/code-frame': 7.29.7 index-to-position: 1.2.0 type-fest: 4.41.0 @@ -6562,6 +7971,8 @@ snapshots: path-exists@3.0.0: {} + path-expression-matcher@1.5.0: {} + path-key@3.1.1: {} path-key@4.0.0: {} @@ -6572,16 +7983,25 @@ snapshots: pathe@2.0.3: {} + pathval@2.0.1: {} + pbf@3.3.0: dependencies: ieee754: 1.2.1 resolve-protobuf-schema: 2.1.0 + pdfmake@0.2.23: + dependencies: + '@foliojs-fork/linebreak': 1.1.2 + '@foliojs-fork/pdfkit': 0.15.3 + iconv-lite: 0.7.2 + xmldoc: 2.0.3 + picocolors@1.1.1: {} - picomatch@2.3.1: {} + picomatch@2.3.2: {} - picomatch@4.0.3: {} + picomatch@4.0.4: {} pify@3.0.0: {} @@ -6593,22 +8013,30 @@ snapshots: pkg-types@1.3.1: dependencies: confbox: 0.1.8 - mlly: 1.8.0 + mlly: 1.8.2 pathe: 2.0.3 - pkg-types@2.3.0: + pkg-types@2.3.1: dependencies: - confbox: 0.2.2 + confbox: 0.2.4 exsolve: 1.0.8 pathe: 2.0.3 - postcss@8.5.3: + png-js@1.1.0: dependencies: - nanoid: 3.3.11 + browserify-zlib: 0.2.0 + + polylabel@1.1.0: + dependencies: + tinyqueue: 2.0.3 + + postcss@8.5.15: + dependencies: + nanoid: 3.3.12 picocolors: 1.1.1 source-map-js: 1.2.1 - preact@10.26.4: {} + preact@10.29.2: {} pretty-ms@9.3.0: dependencies: @@ -6624,9 +8052,7 @@ snapshots: proto-list@1.2.4: {} - protocol-buffers-schema@3.6.0: {} - - punycode@2.3.1: {} + protocol-buffers-schema@3.6.1: {} quadbin@0.2.0: dependencies: @@ -6636,7 +8062,7 @@ snapshots: quick-lru@6.1.2: {} - quick-lru@7.0.0: {} + quick-lru@7.3.0: {} quickselect@2.0.0: {} @@ -6657,19 +8083,24 @@ snapshots: react-is@18.3.1: {} - react-is@19.2.0: {} + react-is@19.2.7: {} - react-refresh@0.14.2: {} + react-refresh@0.17.0: {} react-transition-group@4.4.5(react-dom@18.3.1(react@18.3.1))(react@18.3.1): dependencies: - '@babel/runtime': 7.28.4 + '@babel/runtime': 7.29.7 dom-helpers: 5.2.1 loose-envify: 1.4.0 prop-types: 15.8.1 react: 18.3.1 react-dom: 18.3.1(react@18.3.1) + react-window@2.2.7(react-dom@18.3.1(react@18.3.1))(react@18.3.1): + dependencies: + react: 18.3.1 + react-dom: 18.3.1(react@18.3.1) + react@18.3.1: dependencies: loose-envify: 1.4.0 @@ -6683,16 +8114,16 @@ snapshots: read-package-up@12.0.0: dependencies: find-up-simple: 1.0.1 - read-pkg: 10.0.0 - type-fest: 5.2.0 + read-pkg: 10.1.0 + type-fest: 5.7.0 - read-pkg@10.0.0: + read-pkg@10.1.0: dependencies: '@types/normalize-package-data': 2.4.4 normalize-package-data: 8.0.0 parse-json: 8.3.0 - type-fest: 5.2.0 - unicorn-magic: 0.3.0 + type-fest: 5.7.0 + unicorn-magic: 0.4.0 read-pkg@9.0.1: dependencies: @@ -6714,9 +8145,18 @@ snapshots: reference-spec-reader@0.2.0: {} - registry-auth-token@5.1.0: + regexp.prototype.flags@1.5.4: + dependencies: + call-bind: 1.0.9 + define-properties: 1.2.1 + es-errors: 1.3.0 + get-proto: 1.0.1 + gopd: 1.2.0 + set-function-name: 2.0.2 + + registry-auth-token@5.1.1: dependencies: - '@pnpm/npm-conf': 2.3.1 + '@pnpm/npm-conf': 3.0.2 require-directory@2.1.1: {} @@ -6728,66 +8168,82 @@ snapshots: resolve-protobuf-schema@2.1.0: dependencies: - protocol-buffers-schema: 3.6.0 + protocol-buffers-schema: 3.6.1 - resolve@1.22.10: + resolve@1.22.12: dependencies: - is-core-module: 2.16.1 + es-errors: 1.3.0 + is-core-module: 2.16.2 path-parse: 1.0.7 supports-preserve-symlinks-flag: 1.0.0 - 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spdx-license-ids: 3.0.22 + spdx-license-ids: 3.0.23 spdx-exceptions@2.5.0: {} spdx-expression-parse@3.0.1: dependencies: spdx-exceptions: 2.5.0 - spdx-license-ids: 3.0.22 + spdx-license-ids: 3.0.23 - spdx-license-ids@3.0.22: {} + spdx-license-ids@3.0.23: {} split2@1.0.0: dependencies: @@ -6877,6 +8342,8 @@ snapshots: std-env@3.10.0: {} + std-env@4.1.0: {} + stream-combiner2@1.1.1: dependencies: duplexer2: 0.1.4 @@ -6893,8 +8360,8 @@ snapshots: string-width@7.2.0: dependencies: emoji-regex: 10.6.0 - get-east-asian-width: 1.4.0 - strip-ansi: 7.1.2 + get-east-asian-width: 1.6.0 + strip-ansi: 7.2.0 string_decoder@1.1.1: dependencies: @@ -6904,7 +8371,7 @@ snapshots: dependencies: ansi-regex: 5.0.1 - strip-ansi@7.1.2: + strip-ansi@7.2.0: dependencies: ansi-regex: 6.2.2 @@ -6918,16 +8385,20 @@ snapshots: strip-json-comments@2.0.1: {} - strip-json-comments@3.1.1: {} + strip-literal@3.1.0: + dependencies: + js-tokens: 9.0.1 + + strnum@2.3.0: {} - strnum@1.1.2: {} + style-observer@0.0.8: {} stylis@4.2.0: {} super-regex@1.1.0: dependencies: function-timeout: 1.0.2 - make-asynchronous: 1.0.1 + make-asynchronous: 1.1.0 time-span: 5.1.0 supports-color@5.5.0: @@ -6949,13 +8420,20 @@ snapshots: supports-preserve-symlinks-flag@1.0.0: {} + svg-arc-to-cubic-bezier@3.2.0: {} + tabbable@6.4.0: {} + table-layout@4.1.1: + dependencies: + array-back: 6.2.3 + wordwrapjs: 5.1.1 + tagged-tag@1.0.0: {} temp-dir@3.0.0: {} - tempy@3.1.0: + tempy@3.2.0: dependencies: is-stream: 3.0.0 temp-dir: 3.0.0 @@ -6988,16 +8466,28 @@ snapshots: timezone-groups@0.10.4: {} + tiny-inflate@1.0.3: {} + tinybench@2.9.0: {} - tinyexec@1.0.2: {} + tinyexec@0.3.2: {} + + tinyexec@1.2.4: {} - tinyglobby@0.2.15: + tinyglobby@0.2.17: dependencies: - fdir: 6.5.0(picomatch@4.0.3) - picomatch: 4.0.3 + fdir: 6.5.0(picomatch@4.0.4) + picomatch: 4.0.4 + + tinypool@1.1.1: {} + + tinyqueue@2.0.3: {} + + tinyrainbow@2.0.0: {} + + tinyrainbow@3.1.0: {} - tinyrainbow@3.0.3: {} + tinyspy@4.0.4: {} to-regex-range@5.0.1: dependencies: @@ -7015,31 +8505,43 @@ snapshots: type-fest@4.41.0: {} - type-fest@5.2.0: + type-fest@5.7.0: dependencies: tagged-tag: 1.0.0 - typescript@5.8.2: {} + typescript@5.9.3: {} - ufo@1.6.1: {} + typical@7.3.0: {} + + ufo@1.6.4: {} uglify-js@3.19.3: optional: true - undici-types@7.10.0: {} + undici-types@7.16.0: {} - undici@5.29.0: - dependencies: - '@fastify/busboy': 2.1.1 + undici@6.26.0: {} - undici@7.16.0: {} + undici@7.27.0: {} unicode-emoji-modifier-base@1.0.0: {} + unicode-properties@1.4.1: + dependencies: + base64-js: 1.5.1 + unicode-trie: 2.0.0 + + unicode-trie@2.0.0: + dependencies: + pako: 0.2.9 + tiny-inflate: 1.0.3 + unicorn-magic@0.1.0: {} unicorn-magic@0.3.0: {} + unicorn-magic@0.4.0: {} + unique-string@3.0.0: dependencies: crypto-random-string: 4.0.0 @@ -7052,16 +8554,12 @@ snapshots: dependencies: uzip-module: 1.0.3 - update-browserslist-db@1.1.3(browserslist@4.24.4): + update-browserslist-db@1.2.3(browserslist@4.28.2): dependencies: - browserslist: 4.24.4 + browserslist: 4.28.2 escalade: 3.2.0 picocolors: 1.1.1 - uri-js@4.4.1: - dependencies: - punycode: 2.3.1 - url-join@5.0.0: {} util-deprecate@1.0.2: {} @@ -7073,59 +8571,86 @@ snapshots: spdx-correct: 3.2.0 spdx-expression-parse: 3.0.1 - vite-plugin-dts@4.5.4(@types/node@24.3.0)(rollup@4.40.1)(typescript@5.8.2)(vite@6.2.7(@types/node@24.3.0)(yaml@2.8.2)): + vite-node@3.2.4(@types/node@24.12.4)(yaml@2.9.0): dependencies: - '@microsoft/api-extractor': 7.55.2(@types/node@24.3.0) - '@rollup/pluginutils': 5.3.0(rollup@4.40.1) - '@volar/typescript': 2.4.26 - '@vue/language-core': 2.2.0(typescript@5.8.2) + cac: 6.7.14 + debug: 4.4.3 + es-module-lexer: 1.7.0 + pathe: 2.0.3 + vite: 6.4.3(@types/node@24.12.4)(yaml@2.9.0) + transitivePeerDependencies: + - '@types/node' + - jiti + - less + - lightningcss + - sass + - sass-embedded + - stylus + - sugarss + - supports-color + - terser + - tsx + - yaml + + vite-plugin-dts@4.5.4(@types/node@24.12.4)(rollup@4.61.0)(typescript@5.9.3)(vite@6.4.3(@types/node@24.12.4)(yaml@2.9.0)): + dependencies: + '@microsoft/api-extractor': 7.58.7(@types/node@24.12.4) + '@rollup/pluginutils': 5.4.0(rollup@4.61.0) + '@volar/typescript': 2.4.28 + '@vue/language-core': 2.2.0(typescript@5.9.3) compare-versions: 6.1.1 - debug: 4.4.0 + debug: 4.4.3 kolorist: 1.8.0 - local-pkg: 1.1.2 + local-pkg: 1.2.1 magic-string: 0.30.21 - typescript: 5.8.2 + typescript: 5.9.3 optionalDependencies: - vite: 6.2.7(@types/node@24.3.0)(yaml@2.8.2) + vite: 6.4.3(@types/node@24.12.4)(yaml@2.9.0) transitivePeerDependencies: - '@types/node' - rollup - supports-color - vite@6.2.7(@types/node@24.3.0)(yaml@2.8.2): + vite@6.4.3(@types/node@24.12.4)(yaml@2.9.0): dependencies: - esbuild: 0.25.3 - postcss: 8.5.3 - rollup: 4.40.1 + esbuild: 0.25.12 + fdir: 6.5.0(picomatch@4.0.4) + picomatch: 4.0.4 + postcss: 8.5.15 + rollup: 4.61.0 + tinyglobby: 0.2.17 optionalDependencies: - '@types/node': 24.3.0 + '@types/node': 24.12.4 fsevents: 2.3.3 - yaml: 2.8.2 + yaml: 2.9.0 - vitest@4.0.15(@types/node@24.3.0)(yaml@2.8.2): + vitest@3.2.6(@types/node@24.12.4)(yaml@2.9.0): dependencies: - '@vitest/expect': 4.0.15 - '@vitest/mocker': 4.0.15(vite@6.2.7(@types/node@24.3.0)(yaml@2.8.2)) - '@vitest/pretty-format': 4.0.15 - '@vitest/runner': 4.0.15 - '@vitest/snapshot': 4.0.15 - '@vitest/spy': 4.0.15 - '@vitest/utils': 4.0.15 - es-module-lexer: 1.7.0 + '@types/chai': 5.2.3 + '@vitest/expect': 3.2.6 + '@vitest/mocker': 3.2.6(vite@6.4.3(@types/node@24.12.4)(yaml@2.9.0)) + '@vitest/pretty-format': 3.2.6 + '@vitest/runner': 3.2.6 + '@vitest/snapshot': 3.2.6 + '@vitest/spy': 3.2.6 + '@vitest/utils': 3.2.6 + chai: 5.3.3 + debug: 4.4.3 expect-type: 1.3.0 magic-string: 0.30.21 - obug: 2.1.1 pathe: 2.0.3 - picomatch: 4.0.3 + picomatch: 4.0.4 std-env: 3.10.0 tinybench: 2.9.0 - tinyexec: 1.0.2 - tinyglobby: 0.2.15 - tinyrainbow: 3.0.3 - vite: 6.2.7(@types/node@24.3.0)(yaml@2.8.2) + tinyexec: 0.3.2 + tinyglobby: 0.2.17 + tinypool: 1.1.1 + tinyrainbow: 2.0.0 + vite: 6.4.3(@types/node@24.12.4)(yaml@2.9.0) + vite-node: 3.2.4(@types/node@24.12.4)(yaml@2.9.0) why-is-node-running: 2.3.0 optionalDependencies: - '@types/node': 24.3.0 + '@types/node': 24.12.4 transitivePeerDependencies: - jiti - less @@ -7135,13 +8660,40 @@ snapshots: - sass-embedded - stylus - sugarss + - supports-color - terser - tsx - yaml - vscode-uri@3.1.0: {} + vitest@4.1.8(@types/node@24.12.4)(@vitest/coverage-v8@4.0.15)(vite@6.4.3(@types/node@24.12.4)(yaml@2.9.0)): + dependencies: + '@vitest/expect': 4.1.8 + '@vitest/mocker': 4.1.8(vite@6.4.3(@types/node@24.12.4)(yaml@2.9.0)) + '@vitest/pretty-format': 4.1.8 + '@vitest/runner': 4.1.8 + '@vitest/snapshot': 4.1.8 + '@vitest/spy': 4.1.8 + '@vitest/utils': 4.1.8 + es-module-lexer: 2.1.0 + expect-type: 1.3.0 + magic-string: 0.30.21 + obug: 2.1.1 + pathe: 2.0.3 + picomatch: 4.0.4 + std-env: 4.1.0 + tinybench: 2.9.0 + tinyexec: 1.2.4 + tinyglobby: 0.2.17 + tinyrainbow: 3.1.0 + vite: 6.4.3(@types/node@24.12.4)(yaml@2.9.0) + why-is-node-running: 2.3.0 + optionalDependencies: + '@types/node': 24.12.4 + '@vitest/coverage-v8': 4.0.15(vitest@4.1.8) + transitivePeerDependencies: + - msw - web-worker@1.2.0: {} + vscode-uri@3.1.0: {} web-worker@1.5.0: {} @@ -7158,6 +8710,8 @@ snapshots: wordwrap@1.0.0: {} + wordwrapjs@5.1.1: {} + wrap-ansi@7.0.0: dependencies: ansi-styles: 4.3.0 @@ -7168,9 +8722,15 @@ snapshots: dependencies: ansi-styles: 6.2.3 string-width: 7.2.0 - strip-ansi: 7.1.2 + strip-ansi: 7.2.0 - xml-utils@1.10.1: {} + xml-naming@0.1.0: {} + + xml-utils@1.10.2: {} + + xmldoc@2.0.3: + dependencies: + sax: 1.6.0 xss@1.0.13: dependencies: @@ -7183,11 +8743,9 @@ snapshots: yallist@3.1.1: {} - yallist@4.0.0: {} + yaml@1.10.3: {} - yaml@1.10.2: {} - - yaml@2.8.2: {} + yaml@2.9.0: {} yargs-parser@20.2.9: {} @@ -7224,7 +8782,9 @@ snapshots: '@zarrita/storage': 0.1.4 numcodecs: 0.3.2 - zod@3.24.2: {} + zod@3.25.76: {} + + zod@4.4.3: {} zstd-codec@0.1.5: optional: true diff --git a/pnpm-workspace.yaml b/pnpm-workspace.yaml index aa50a8cc..10b8ef9d 100644 --- a/pnpm-workspace.yaml +++ b/pnpm-workspace.yaml @@ -1,5 +1,6 @@ packages: - 'viewer' + - 'anndata-zarr' - 'roi-selector' - 'sites/*' diff --git a/roi-selector/src/RoiSelector.tsx b/roi-selector/src/RoiSelector.tsx index 2fa3da8f..61c28848 100644 --- a/roi-selector/src/RoiSelector.tsx +++ b/roi-selector/src/RoiSelector.tsx @@ -101,12 +101,16 @@ function RoiSelector({ const availW = Math.max(viewport.width - 2 * padding, 1); const availH = Math.max(viewport.height - 2 * padding, 1); const zoom = Math.log2(Math.min(availW / roiWidth, availH / roiHeight)); - setViewState({ - zoom, - target: [(bounds.min.x + bounds.max.x) / 2, (bounds.min.y + bounds.max.y) / 2], - width: viewport.width, - height: viewport.height, - }); + + if (setViewState) { + setViewState({ + zoom, + target: [(bounds.min.x + bounds.max.x) / 2, (bounds.min.y + bounds.max.y) / 2], + width: viewport.width, + height: viewport.height, + }); + } + if (hasZAxis && zInfo && bounds.min.z !== undefined && bounds.max.z !== undefined) { // Only jump Z if the current slice is outside the ROI's Z range. if (zInfo.zValue < bounds.min.z || zInfo.zValue > bounds.max.z) { diff --git a/roi-selector/src/state.ts b/roi-selector/src/state.ts index e40e8d22..89519aa0 100644 --- a/roi-selector/src/state.ts +++ b/roi-selector/src/state.ts @@ -245,7 +245,7 @@ export interface ViewerInfo { zInfo: { zValue: number; zMax: number } | null; tInfo: { tValue: number; tMax: number } | null; viewport: { width: number; height: number } | null; - setViewState: (vs: { zoom: number; target: [number, number]; width: number; height: number }) => void; + setViewState?: (vs: { zoom: number; target: [number, number]; width: number; height: number }) => void; setZSlice: (z: number) => void; setTSlice: (t: number) => void; } diff --git a/sites/app/package.json b/sites/app/package.json index a4773de4..b3edbce9 100644 --- a/sites/app/package.json +++ b/sites/app/package.json @@ -9,8 +9,9 @@ "check": "tsc" }, "dependencies": { + "@biongff/vizarr": "workspace:viewer", + "@biongff/anndata-zarr": "workspace:anndata-zarr", "@biongff/roi-selector": "workspace:*", - "@biongff/vizarr": "workspace:*", "@emotion/react": "^11.14.0", "@emotion/styled": "^11.14.1", "@mui/icons-material": "^7.2.0", diff --git a/sites/app/src/App.tsx b/sites/app/src/App.tsx index e1359b50..d2e9629a 100644 --- a/sites/app/src/App.tsx +++ b/sites/app/src/App.tsx @@ -1,9 +1,26 @@ +import { type ViewState, Vizarr, type labelColor } from "@biongff/vizarr"; + +//@ts-ignore +//No types provided by anndata-zarr plugin +import { AnndataController, AnndataProvider } from "@biongff/anndata-zarr"; import { RoiSelector, useRoiDeckExtension } from "@biongff/roi-selector"; import type { PendingRoi, RoiDrawState, SavedRoi, ViewerInfo } from "@biongff/roi-selector"; -import { type ViewState, Vizarr } from "@biongff/vizarr"; +import CssBaseline from "@mui/material/CssBaseline"; +import { ThemeProvider, createTheme } from "@mui/material/styles"; import debounce from "just-debounce-it"; import * as React from "react"; +import "@biongff/anndata-zarr/dist/anndata-zarr.css"; + +const darkTheme = createTheme({ + palette: { + mode: "dark", + }, + typography: { + fontSize: 12, + }, +}); + function parseViewStateFromUrl(): ViewState | undefined { const url = new URL(window.location.href); const viewStateString = url.searchParams.get("viewState"); @@ -30,16 +47,19 @@ export default function App() { } }, []); - const { sources, viewState, enableRoi } = React.useMemo(() => { + const { sources, viewState, enableRoi, tableURLs } = React.useMemo(() => { const url = new URL(urlString); const { searchParams } = url; return { sources: searchParams.getAll("source"), viewState: parseViewStateFromUrl(), enableRoi: searchParams.get("roi") === "1", + tableURLs: searchParams.getAll("anndata"), }; }, [urlString]); + const [colors, setColors] = React.useState((): labelColor[][] => Array(sources.length).fill([])); + // Debounced viewState change handler const handleViewStateChange = React.useMemo( () => @@ -57,7 +77,25 @@ export default function App() { [], ); - // ---- Viewer state (received from Vizarr via callback) ---- + const selectCallback = React.useCallback((colorData: labelColor[], i: number) => { + setColors((prev) => { + return prev.map((c, ci) => (ci === i ? colorData : c)); + }); + }, []); + + const anndataControllers = React.useMemo(() => { + return sources.map((_s, i) => { + if (!tableURLs?.[i]) return null; + return ( + selectCallback(colorData, i)} + /> + ); + }); + }, [tableURLs, sources, selectCallback]); + const [viewerInfo, setViewerInfo] = React.useState(null); // ---- ROI state (lifted to app level) ---- @@ -76,31 +114,37 @@ export default function App() { zInfo: viewerInfo?.zInfo ?? null, tInfo: viewerInfo?.tInfo ?? null, }); - return (
- - {enableRoi && viewerInfo && ( - - )} - + + + +
{anndataControllers}
+ + {enableRoi && viewerInfo && ( + + )} + + +
); } diff --git a/sites/app/src/index.css b/sites/app/src/index.css new file mode 100644 index 00000000..308a6312 --- /dev/null +++ b/sites/app/src/index.css @@ -0,0 +1,9 @@ +.container-right { + position: absolute; + top: 1rem; + right: 1rem; + bottom: 1rem; + z-index: 1; + padding: 0.5rem; + overflow-y: auto; +} diff --git a/sites/app/src/main.tsx b/sites/app/src/main.tsx index dc0390d2..c4efe3c7 100644 --- a/sites/app/src/main.tsx +++ b/sites/app/src/main.tsx @@ -2,6 +2,7 @@ import { version } from "@biongff/vizarr"; import React, { StrictMode } from "react"; import { createRoot } from "react-dom/client"; import App from "./App"; +import "./index.css"; console.log(`vizarr v${version}: https://github.com/BioNGFF/vizarr`); diff --git a/sites/app/vite.config.js b/sites/app/vite.config.js index d29a5c83..5f717eab 100644 --- a/sites/app/vite.config.js +++ b/sites/app/vite.config.js @@ -3,18 +3,18 @@ import * as path from "node:path"; import react from "@vitejs/plugin-react"; import { defineConfig } from "vite"; -const source = process.env.VIZARR_DATA || "https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.1/6001253.zarr"; - -export default defineConfig(({ mode }) => { - return { - base: "./", - plugins: [react()], - resolve: { - alias: { - "@biongff/vizarr": path.resolve(__dirname, "../../viewer/src/index.tsx"), - "@biongff/roi-selector": path.resolve(__dirname, "../../roi-selector/src/index.tsx"), - }, +export default defineConfig(({ mode }) => ({ + plugins: [react()], + resolve: { + alias: { + ...(mode === "development" + ? { + "@biongff/vizarr": path.resolve(__dirname, "../../viewer/src/index.tsx"), + "@biongff/anndata-zarr/dist/anndata-zarr.css": path.resolve(__dirname, "../../anndata-zarr/src/index.css"), + "@biongff/anndata-zarr": path.resolve(__dirname, "../../anndata-zarr/src/index.js"), + "@biongff/roi-selector": path.resolve(__dirname, "../../roi-selector/src/index.tsx"), + } + : {}), }, - server: { open: `?source=${source}` }, - }; -}); + }, +})); diff --git a/viewer/package.json b/viewer/package.json index 3d45143a..02d0901d 100644 --- a/viewer/package.json +++ b/viewer/package.json @@ -5,7 +5,9 @@ "main": "dist/biongff-vizarr.cjs.js", "module": "dist/biongff-vizarr.es.js", "types": "dist/index.d.ts", - "files": ["dist"], + "files": [ + "dist" + ], "exports": { ".": { "types": "./dist/index.d.ts", @@ -26,6 +28,7 @@ "@deck.gl/layers": "~9.0.0", "@hms-dbmi/viv": "~0.17.2", "@vivjs/types": "~0.17.0", + "@vivjs/loaders": "0.17.2", "@zarrita/storage": "0.1.4", "deck.gl": "~9.0.0", "jotai": "^1.0.0", @@ -55,6 +58,7 @@ "vite-plugin-dts": "^4.5.4" }, "overrides": { - "react-is": "^18.3.1" + "react-is": "^18.3.1", + "wgsl_reflect": "1.2.0" } } diff --git a/viewer/src/api.tsx b/viewer/src/api.tsx index d6284bab..a44c9497 100644 --- a/viewer/src/api.tsx +++ b/viewer/src/api.tsx @@ -27,6 +27,12 @@ type Events = { export type { ViewState, ImageLayerConfig }; +export type labelColor = { + labelValue: number; + rgba: [r: number, g: number, b: number, a: number]; + value?: string | number | null; +}; + export interface VizarrViewer { addImage(config: ImageLayerConfig): void; setViewState(viewState: ViewState): void; diff --git a/viewer/src/components/Viewer.tsx b/viewer/src/components/Viewer.tsx index e30997ed..6817fa5e 100644 --- a/viewer/src/components/Viewer.tsx +++ b/viewer/src/components/Viewer.tsx @@ -25,7 +25,6 @@ export default function Viewer({ additionalLayers = [], pluginCursor, onPluginCl const [viewState, setViewState] = useViewState(); const layers = useAtomValue(layerAtoms); const firstLayer = layers[0] as VizarrLayer; - const axisNavigationSnackbar = useAxisNavigation(deckRef); const resetViewState = React.useCallback( diff --git a/viewer/src/components/VizarrViewer.tsx b/viewer/src/components/VizarrViewer.tsx index 48cceb8f..9ca049bd 100644 --- a/viewer/src/components/VizarrViewer.tsx +++ b/viewer/src/components/VizarrViewer.tsx @@ -6,7 +6,9 @@ import { type PrimitiveAtom, Provider, atom, useAtomValue, useSetAtom } from "jo import React, { useId } from "react"; import { getSourceDataError, sourceDataValid, writeUserErrorMessage } from "../error"; import { ViewStateContext, useViewState } from "../hooks"; +import { loadSources } from "../io"; import { createSourceData } from "../io"; +import type { OmeColor } from "../layers/label-layer"; import { type ImageLayerConfig, type ViewState, @@ -35,7 +37,6 @@ export interface ViewerInfo { zInfo: { zValue: number; zMax: number } | null; tInfo: { tValue: number; tMax: number } | null; viewport: ViewportSize | null; - setViewState: (vs: ViewState) => void; setZSlice: (z: number) => void; setTSlice: (t: number) => void; } @@ -45,6 +46,7 @@ export interface VizarrViewerProps { viewState?: ViewState; onViewStateChange?: (viewState: ViewState) => void; onViewerStateChange?: (info: ViewerInfo) => void; + labelColours?: OmeColor[][]; additionalLayers?: Layer[]; pluginCursor?: string; onPluginClick?: (coordinate: [number, number]) => boolean; @@ -80,18 +82,9 @@ function ViewerBridge({ const zInfo = useAtomValue(currentZInfoAtom); const tInfo = useAtomValue(currentTInfoAtom); const viewport = useAtomValue(viewportAtom); - const [, setViewState] = useViewState(); - const setZSlice = useSetAtom(setZSliceAtom); const setTSlice = useSetAtom(setTSliceAtom); - const stableSetViewState = React.useCallback( - (vs: ViewState) => { - setViewState(vs); - }, - [setViewState], - ); - // Notify host application when viewer state changes React.useEffect(() => { onViewerStateChange?.({ @@ -100,11 +93,10 @@ function ViewerBridge({ zInfo, tInfo, viewport, - setViewState: stableSetViewState, setZSlice, setTSlice, }); - }, [sourceUrls, imageBounds, zInfo, tInfo, viewport, stableSetViewState, setZSlice, setTSlice, onViewerStateChange]); + }, [sourceUrls, imageBounds, zInfo, tInfo, viewport, setZSlice, setTSlice, onViewerStateChange]); return ( <> @@ -125,6 +117,7 @@ function VizarrViewerComponent({ viewState: initialViewState, onViewStateChange, onViewerStateChange, + labelColours, additionalLayers, pluginCursor, onPluginClick, @@ -137,11 +130,10 @@ function VizarrViewerComponent({ const redirectObj = useAtomValue(redirectObjAtom); const setSourceError = useSetAtom(sourceErrorAtom); const sourceWarning = useAtomValue(sourceWarningAtom); - React.useEffect(() => { - if (initialViewState) { - setViewStateAtom(initialViewState); - } - }, [initialViewState, setViewStateAtom]); + + if (initialViewState) { + setViewStateAtom(initialViewState); + } const viewStateAtomWithEffect: PrimitiveAtom = atom( (get) => get(viewStateAtom), @@ -157,33 +149,12 @@ function VizarrViewerComponent({ }, ); - const [configs] = React.useState( - sources.map((source, index) => { - const config: ImageLayerConfig = { - source: source, - }; - return config; - }), - ); - React.useEffect(() => { - async function loadSources() { - const results = await Promise.allSettled( - configs.map(async (config, index) => { - const sourceData = await createSourceData(config); - const id = Math.random().toString(36).slice(2); - if (!sourceData.name) { - sourceData.name = `image_${index}`; - } - return { id, ...sourceData }; - }), - ); - let sourceDatas = []; - + loadSources(sources, labelColours).then((results) => { if (!sourceDataValid(results)) { setSourceError(writeUserErrorMessage(getSourceDataError(results))); } - + let sourceDatas = []; for (const res of results) { if (res.status === "fulfilled") { sourceDatas.push(res.value); @@ -191,12 +162,11 @@ function VizarrViewerComponent({ console.error(res.reason); } } - sourceDatas = sourceDatas.filter((s) => s !== null); - setSourceInfo(sourceDatas); - } + const sourceData = sourceDatas.filter((s) => s !== null); + setSourceInfo(sourceData); + }); + }, [sources, labelColours, setSourceInfo, setSourceError]); - loadSources(); - }, [configs, setSourceInfo, setSourceError]); return ( <> {redirectObj === null && ( @@ -238,7 +208,7 @@ function VizarrViewerComponent({

)} - {sourceWarning.length && + {!!sourceWarning.length && sourceWarning.map((warning, index) => { return ; })} diff --git a/viewer/src/index.tsx b/viewer/src/index.tsx index 0b20015e..dde3ed85 100644 --- a/viewer/src/index.tsx +++ b/viewer/src/index.tsx @@ -5,7 +5,7 @@ export { default as Vizarr } from "./components/VizarrViewer"; export type { VizarrViewerProps, ViewerInfo } from "./components/VizarrViewer"; export { createViewer } from "./api"; -export type { VizarrViewer } from "./api"; +export type { VizarrViewer, labelColor } from "./api"; export type { ViewState, ImageLayerConfig, ViewportSize } from "./state"; diff --git a/viewer/src/io.ts b/viewer/src/io.ts index 940e230f..63b63533 100644 --- a/viewer/src/io.ts +++ b/viewer/src/io.ts @@ -3,7 +3,7 @@ import { ZarrPixelSource } from "./ZarrPixelSource"; import { loadOmeMultiscales, loadPlate, loadWell } from "./ome"; import * as utils from "./utils"; -import { DEFAULT_LABEL_OPACITY } from "./layers/label-layer"; +import { DEFAULT_LABEL_OPACITY, type OmeColor } from "./layers/label-layer"; import type { BaseLayerProps } from "./layers/viv-layers"; import type { ImageLayerConfig, LayerState, MultichannelConfig, SingleChannelConfig, SourceData } from "./state"; @@ -222,7 +222,7 @@ export function initLayerStateFromSource(source: SourceData & { id: string }): L let labels = undefined; if (source.labels && source.labels.length > 0) { labels = source.labels.map((label, i) => ({ - on: false, + on: label.on ? label.on : false, transformSourceSelection: getSourceSelectionTransform(label.loader[0], source.loader[0]), layerProps: { id: `${source.id}_${i}`, @@ -233,7 +233,6 @@ export function initLayerStateFromSource(source: SourceData & { id: string }): L }, })); } - return { kind: "multiscale", layerProps: { @@ -274,3 +273,26 @@ function getSourceSelectionTransform( ); }; } + +export async function loadSources(sources: string[], labelColors?: OmeColor[][]) { + const results = await Promise.allSettled( + sources.map(async (source, index) => { + const sourceData = await createSourceData({ source: source }); + const id = Math.random().toString(36).slice(2); + if (!sourceData.name) { + sourceData.name = `image_${index}`; + } + if (labelColors?.[index].length) { + if (!sourceData.labels || !sourceData.labels.length) { + throw new utils.AssertionError("Feature colours provided but source image has no label."); + } + //Really not the best way to do this but the layer state is heavily wrapped up in + //being derived directly from the sourceData and would require a fairly large refactor to find + sourceData.labels[0].colors = labelColors[index]; + sourceData.labels[0].on = true; + } + return { id, ...sourceData }; + }), + ); + return results; +} diff --git a/viewer/src/state.ts b/viewer/src/state.ts index 4f7d0f46..d7ce66bb 100644 --- a/viewer/src/state.ts +++ b/viewer/src/state.ts @@ -68,6 +68,7 @@ export type ImageLabels = Array<{ loader: ZarrPixelSource[]; modelMatrix: Matrix4; colors?: ReadonlyArray; + on?: boolean; }>; export type SourceData = { diff --git a/viewer/tests/features.test.js b/viewer/tests/features.test.js new file mode 100644 index 00000000..44667330 --- /dev/null +++ b/viewer/tests/features.test.js @@ -0,0 +1,37 @@ +import { AssertionError } from "node:assert"; +import { expect, test } from "vitest"; +import { loadSources } from "../src/io"; +import { range } from "../src/utils"; + +const labelImageURL = "https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.5/idr0062A/6001240_labels.zarr"; +const imageURL = "https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.5/idr0066/ExpD_chicken_embryo_MIP.ome.zarr"; +const labelIds = range(61); + +function generateLabelColors(labelIds) { + return labelIds.map((id) => { + return { + labelValue: id + 1, + rgba: [ + Math.floor(Math.random() * 250), + Math.floor(Math.random() * 250), + Math.floor(Math.random() * 250), + Math.floor(Math.random() * 250), + ], + value: Math.random(), + }; + }); +} + +test("Can create source data with externally-defined label colours", async () => { + const labelColours = generateLabelColors(labelIds); + const sources = await loadSources([labelImageURL], [labelColours]); + expect(sources[0].value.labels[0].colors).toBe(labelColours); +}); + +test("Attempting to add externally-defined label colours to image without label leads to an error", async () => { + const labelColours = generateLabelColors(labelIds); + const sources = await loadSources([imageURL], [labelColours]); + expect(sources[0].status).toBe("rejected"); + //Requires AssertionError to provide correct error message to user + expect(sources[0].reason.name).toBe("AssertionError"); +});